Notice: We have moved solgenomics to a new server and hosting system which caused some instability over the last few days. We apologize for any inconvenience.

Clone Read LE_HBa0081A17_T7_67233

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0081A17_T7_67233
Primer
T7
ID from Seq. Facility
LE_HBa_081_A17-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
616 trimmed for vector and quality, 819 raw
Sequence
>LE_HBa0081A17_T7_67233 (raw untrimmed)
CTTGGGACCCGGGGGTTCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTTGGGTACCAAAAAATTTACCGTCTCCGGTTGAAGATGGCAAAAACGACGGC
GTTTTAACCTCCACAGCGACGGAAAATATTCAGGCGATTAAGAATCAACGAGGAAAAATATGTATCCTCAGCATTGATGGTGGTGGAATGCGAAATATAT
TATCAGGTAAAGCTTTAGCGTATTTGGAACAAGCGTTGAAGGTTAAATCGGGGAATCCAGAAGCTAGAATCGCCGATTATTTCGACGTTGCTGTTGGTTC
CGGCGTTGGAGGAATTTTCACGGCGATGTTATTTTCAACGAAGGATCAAAACCGTCCTGTTTTCCAAGCTGAAGATACATGGAAACTTCTAGAGGAACAA
GGTAGAAGAATTTATCCTTCAAAAGGGTCGACTTCTGCCGGAAATGGTTTTCTCCGGCGAGTTCTCCGAGGTGGCGCAACCCGTTCTGATGCTTCCGGTT
TAGAGAAAGTGATGAAAGAAGCATTTATGGATAAAAAAACCGGTCGAAGCCTTACGTTAAAGGATACTCTTAAACCGGTTTTAATCCCCTGTTATGACCT
TTCCAGTACTGCACCGTTTTTGTTCTCCCGAGCTGATGCTTTCGAATCCGAAAGCTTTGATCCCCGGTTATGGGAAATTTGCCGGGCTACATCAACTGAA
CCCGGGACTCTTTCAACCGGTTTGTATGAAAACCCTCAATGGAAAAACCGGATGCCTTACCCCCTGACGGCGGTTTAGCAATGAATCATCCCCTACCGCC
CCCCCCCAATTAACCCACT
>LE_HBa0081A17_T7_67233 (trimmed for quality and cloning vector)
AGCTTTGGGTACCAAAAAATTTACCGTCTCCGGTTGAAGATGGCAAAAACGACGGCGTTTTAACCTCCACAGCGACGGAAAATATTCAGGCGATTAAGAA
TCAACGAGGAAAAATATGTATCCTCAGCATTGATGGTGGTGGAATGCGAAATATATTATCAGGTAAAGCTTTAGCGTATTTGGAACAAGCGTTGAAGGTT
AAATCGGGGAATCCAGAAGCTAGAATCGCCGATTATTTCGACGTTGCTGTTGGTTCCGGCGTTGGAGGAATTTTCACGGCGATGTTATTTTCAACGAAGG
ATCAAAACCGTCCTGTTTTCCAAGCTGAAGATACATGGAAACTTCTAGAGGAACAAGGTAGAAGAATTTATCCTTCAAAAGGGTCGACTTCTGCCGGAAA
TGGTTTTCTCCGGCGAGTTCTCCGAGGTGGCGCAACCCGTTCTGATGCTTCCGGTTTAGAGAAAGTGATGAAAGAAGCATTTATGGATAAAAAAACCGGT
CGAAGCCTTACGTTAAAGGATACTCTTAAACCGGTTTTAATCCCCTGTTATGACCTTTCCAGTACTGCACCGTTTTTGTTCTCCCGAGCTGATGCTTTCG
AATCCGAAAGCTTTGA

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.973056
Expected error %
0.123051
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At2g39220.1 Score 216 E Value 1e-56 Identity 19.10% Align. Length 590bp (95.78%) Frame 1
68415.m04817 patatin family protein similar to patatin-like latex allergen [Hevea brasiliensis][PMID:10589016]; contains patatin domain PF01734
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At3g54950.1 Score 215 E Value 1e-56 Identity 21.30% Align. Length 524bp (85.06%) Frame 1
68416.m06092 patatin-related low similarity to patatin [GI:169500][Solanum tuberosum]; contains Patatin domain PF01734
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAP68308.1| Score 216 E Value 4e-55 Identity 19.10% Align. Length 590bp (95.78%) Frame 1
At2g39220 [Arabidopsis thaliana] gb|AAN31902.1| unknown protein [Arabidopsis thaliana] gb|AAC28986.1| similar to latex allergen from Hevea brasiliensis [Arabidopsis thaliana] gb|AAL32726.1| putative patatin protein [Arabidopsis thaliana] ref|NP_181455.1| patatin family protein [Arabidopsis thaliana] pir||T02580 hypothetical protein At2g39220 [imported] - Arabidopsis thaliana
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAB41089.1| Score 215 E Value 6e-55 Identity 21.30% Align. Length 524bp (85.06%) Frame 1
putative protein [Arabidopsis thaliana] ref|NP_191055.1| patatin-related [Arabidopsis thaliana] pir||T06725 hypothetical protein F28P10.70 - Arabidopsis thaliana
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0081A17
Clone
Clone name
hba-81a17
LE_HBa0081A17
P081A17
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found