Clone Read LE_HBa0186B07_SP6_65724

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0186B07_SP6_65724
Primer
SP6
ID from Seq. Facility
LE_HBa_186_B07-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
830 trimmed for vector and quality, 945 raw
Genbank Accession
DU075068
Sequence
>LE_HBa0186B07_SP6_65724 (raw untrimmed)
CCCAGGCTTACTGAGTATTTGATTTTATGATATATCCAACATTAATTTTAGGACAACTGGACAAAATGGATGGCCTGCAGAGGAAAAACACTTGTTTTTC
ATGTTTAGTTAACAATATTCATCTTCATTTTCTTAACGGAGCTGTAGGAAAGAATCTTTGGCCTGATTTTGGAAGTGACTAATTCTAGTTCATGTACAAA
AATAACTTACTATTAGGAAATAAGTTGATATTACTCGGTCGTCCTCAAATCTGCAAATACATTTTTAAGACTATTTGCTAGTAATACTGTAGTTTCATCA
GCTTATATGCAATAGGAATAAGGTAAGCAGAGGAAGTTTGACTAGTTTTCTTGGTACATGTATAGCAAATAGTAACTGCTAATTTGAAATTTTGAATTTG
AAAACTAAATCATCACAAATATGTCTTTATTGAAGGTAAATGTTTATGTACTTGGCAGGATCCAGAGAAAATTGTCTTCCATATAGTGACTGATTCTCTC
AACCTGCCAGCGATGTCGATGTGGTTCTTGATGAATCCTCCTGGAAAAGCTACCATTCAAATCCAGAGCATAGGCGGTTTTGAATTGTTATCAATCAAAT
ACAATGAGGATCAGCAGAAGCAAAAAGGCCTCGATCCAAGATATGTTTCTGCGCTGAATCACTTGCGTTTTTATCTTCCTGATATTTTTCCTTCTGTGAA
CAAGATTGTGTTCCTCGACCATGATGTGGTTGTGCGAAAAGATCTAACCAGACTTTGGCACATCAACATTAAGGGCAAAGTGAATGGTGCAGTTGAGACT
TGTGTGGAAGGTGAGCCTTCATTCCGCCGAATGGATATGTTCATCAATTTCACAGACCCCTCGGTGGCAACAAGGTTTCATGCAGAACCATGCACTTGGG
CATATGGGATGAGTGTATTTGATCGGCAGGAGTGGAGGAGCCGAT
>LE_HBa0186B07_SP6_65724 (trimmed for quality and cloning vector)
TTTATGATATATCCAACATTAATTTTAGGACAACTGGACAAAATGGATGGCCTGCAGAGGAAAAACACTTGTTTTTCATGTTTAGTTAACAATATTCATC
TTCATTTTCTTAACGGAGCTGTAGGAAAGAATCTTTGGCCTGATTTTGGAAGTGACTAATTCTAGTTCATGTACAAAAATAACTTACTATTAGGAAATAA
GTTGATATTACTCGGTCGTCCTCAAATCTGCAAATACATTTTTAAGACTATTTGCTAGTAATACTGTAGTTTCATCAGCTTATATGCAATAGGAATAAGG
TAAGCAGAGGAAGTTTGACTAGTTTTCTTGGTACATGTATAGCAAATAGTAACTGCTAATTTGAAATTTTGAATTTGAAAACTAAATCATCACAAATATG
TCTTTATTGAAGGTAAATGTTTATGTACTTGGCAGGATCCAGAGAAAATTGTCTTCCATATAGTGACTGATTCTCTCAACCTGCCAGCGATGTCGATGTG
GTTCTTGATGAATCCTCCTGGAAAAGCTACCATTCAAATCCAGAGCATAGGCGGTTTTGAATTGTTATCAATCAAATACAATGAGGATCAGCAGAAGCAA
AAAGGCCTCGATCCAAGATATGTTTCTGCGCTGAATCACTTGCGTTTTTATCTTCCTGATATTTTTCCTTCTGTGAACAAGATTGTGTTCCTCGACCATG
ATGTGGTTGTGCGAAAAGATCTAACCAGACTTTGGCACATCAACATTAAGGGCAAAGTGAATGGTGCAGTTGAGACTTGTGTGGAAGGTGAGCCTTCATT
CCGCCGAATGGATATGTTCATCAATTTCAC

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.962945
Expected error %
0.180678
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At2g30575.1 Score 182 E Value 3e-46 Identity 21.20% Align. Length 395bp (47.59%) Frame 2
68415.m03725 glycosyl transferase family 8 protein contains Pfam profile: PF01501 glycosyl transferase family 8
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At1g06780.1 Score 178 E Value 3e-45 Identity 21.20% Align. Length 395bp (47.59%) Frame 2
68414.m00721 glycosyl transferase family 8 protein contains Pfam profile: PF01501 glycosyl transferase family 8
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAO00923.1| Score 182 E Value 1e-44 Identity 21.20% Align. Length 395bp (47.59%) Frame 2
unknown protein [Arabidopsis thaliana] gb|AAL91202.1| unknown protein [Arabidopsis thaliana] ref|NP_850150.1| glycosyl transferase family 8 protein [Arabidopsis thaliana]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAM14391.1| Score 178 E Value 1e-43 Identity 21.20% Align. Length 395bp (47.59%) Frame 2
unknown protein [Arabidopsis thaliana] gb|AAK76574.1| unknown protein [Arabidopsis thaliana] gb|AAF63140.1| Unknown protein [Arabidopsis thaliana] ref|NP_563771.1| glycosyl transferase family 8 protein [Arabidopsis thaliana] pir||F86202 hypothetical protein [imported] - Arabidopsis thaliana
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0186B07
Clone
Clone name
hba-186b7
LE_HBa0186B07
P186B07
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found