Clone Read LE_HBa0033A22_T7_6571

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0033A22_T7_6571
Primer
T7
ID from Seq. Facility
LE_HBa_033_A22-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
817 trimmed for vector and quality, 873 raw
Genbank Accession
DU025999
Sequence
>LE_HBa0033A22_T7_6571 (raw untrimmed)
CCCTGGCTTGTACTAGGGGAATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTTACATTAATAAAATTGTGAGGTTGCGTGGGGTTCCTTTGTCTATCA
TCTCAGATAGAGGTCCTCAATGTACCTCTCATTTCTGGAAGTCGTTTCAGAAGGGTCTTGGTACTGAAGTTAACCTTAGCAAAGCATTTCATCCATAAAA
GGATAGACAGACAAAGCGTACCATTTAGACCCTAGAGGATATGTAGAGAGCTTGCATGATCGATTTCAAAGGGCATTTGGGATGATCACCTTAACTTATT
GAGTTCCCCTACAACAATAGCTACAATTTTAGCATTCAGATGGCCCCGTATGAGGCACTAGACGTGCGTAGATGTAGAATTCCTGTTGGTTGGTTTGAAG
TAGGTGAAGCAGCTTTGATAGATCCATATTAAGTCCTTCATGCTATGGGGTGAGTGCAACTTATTAGAGATAGACTTAAGATAGCCCAGAGTCGTCAGTA
ATCTTATGCAGATGTAAGGAGTATGGAACTAGAGTTCCAAGTTGATGATTGTATTTCTGGAAAGTGTAACCTATGAAGGAGGTCATGAGATTTGGTAAGA
AAGGGAAGCTCAGTCTTAGATATGTATTCCCTTACAAGATCTTGAAAAAGGTTGGAATGGTGTCATATGAGTTAGAGTTGCCAGCGGAATTAGCAACAGT
GCATCCAATCTTCCACACCTGGCTCTTGAAGAAGTTTTTGGGTGGTCCAGCCTCTATAGTGCCATTAGAGATTGTGGCATTGAAAGATAGTCTTTATTAT
GGACATGTACCAGTTGAGATTTTTGAACTTTAGGTTAAAAGGTAAGAAAAAAGAGGCGCTTCAATCAAGGTTC
>LE_HBa0033A22_T7_6571 (trimmed for quality and cloning vector)
AGCTTTACATTAATAAAATTGTGAGGTTGCGTGGGGTTCCTTTGTCTATCATCTCAGATAGAGGTCCTCAATGTACCTCTCATTTCTGGAAGTCGTTTCA
GAAGGGTCTTGGTACTGAAGTTAACCTTAGCAAAGCATTTCATCCATAAAAGGATAGACAGACAAAGCGTACCATTTAGACCCTAGAGGATATGTAGAGA
GCTTGCATGATCGATTTCAAAGGGCATTTGGGATGATCACCTTAACTTATTGAGTTCCCCTACAACAATAGCTACAATTTTAGCATTCAGATGGCCCCGT
ATGAGGCACTAGACGTGCGTAGATGTAGAATTCCTGTTGGTTGGTTTGAAGTAGGTGAAGCAGCTTTGATAGATCCATATTAAGTCCTTCATGCTATGGG
GTGAGTGCAACTTATTAGAGATAGACTTAAGATAGCCCAGAGTCGTCAGTAATCTTATGCAGATGTAAGGAGTATGGAACTAGAGTTCCAAGTTGATGAT
TGTATTTCTGGAAAGTGTAACCTATGAAGGAGGTCATGAGATTTGGTAAGAAAGGGAAGCTCAGTCTTAGATATGTATTCCCTTACAAGATCTTGAAAAA
GGTTGGAATGGTGTCATATGAGTTAGAGTTGCCAGCGGAATTAGCAACAGTGCATCCAATCTTCCACACCTGGCTCTTGAAGAAGTTTTTGGGTGGTCCA
GCCTCTATAGTGCCATTAGAGATTGTGGCATTGAAAGATAGTCTTTATTATGGACATGTACCAGTTGAGATTTTTGAACTTTAGGTTAAAAGGTAAGAAA
AAAGAGGCGCTTCAATC

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.953715
Expected error %
0.417952
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38724.1| Score 209 E Value 2e-81 Identity 66.70% Align. Length 790bp (96.70%) Frame 1
putative retrotransposon protein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38744.1| Score 209 E Value 1e-67 Identity 66.70% Align. Length 649bp (79.44%) Frame 1
putative gag-pol polyprotein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0033A22
Clone
Clone name
hba-33a22
LE_HBa0033A22
C03HBa0033A22
P033A22
Clone type
BAC
Contamination
none
Estimated length
119,991
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found