Clone Read LE_HBa0130N01_SP6_64752

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0130N01_SP6_64752
Primer
SP6
ID from Seq. Facility
LE_HBa_130_N01-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
646 trimmed for vector and quality, 949 raw
Genbank Accession
DU074947
Sequence
>LE_HBa0130N01_SP6_64752 (raw untrimmed)
CCCCATATTTTTTTGTTTCCCCTGGAAGAGCCCTAGATGAATAGTTGGAAATGACCCCGCACACATCTGAAGATAGCTGCTAGCACCTGGATGTTGGCAA
CTTCCTTAACTGGGAATAGCATGCTCTTACTCCAATTAACATGTAGCCCTAATACTACTTCAAAGATCACCAGAATAACTCTCAGATGTTTTACTTGGTC
ATATCAGCATAACAGAAGATTGAAGAGTCATCTGTTGTAATCTCAGCACTGTTGTCTCCCTGATTGCAGCTTTAAACCCCTTCAGAAAACACCGTTGTCC
TTCACCATCTTAAACAACTGGTTCAGTCCTTCCACTGCAATAAGAAACAGGAATGGTGATAGAGGATCACCTTGCCTCAAACCTCTCACGGAAGGGAAAG
GTCCTTCTGTACACCCATTCACCAAGATAGAAAATTTTCACAATCTTTATGTCGAAGAGATTCAATTAATCCATTTCTCACCAAAGGCCATGCCTTTTAG
ATAGAAATTTAAGAAGGAAGCTCCAATTAACATGGTCATGCACCTTCAAGCATAACATCCAACAAAGTTGATTAATTTCTATATTCGCTGTTAAACTTCA
AGCATAACATCCCACAAAGTTGACTAATTTATATATTTGTTGTCGAATTGTACTCTCAATTAATCAATCAAAGCCTCAGGCCCATAATAATTTGAGGGTG
GCTATATTCTCTGTATCGGTTCCCACTCTATTCAAGCTACTTCATTTCTTCACTCAATAACTTGACCTTCTTAAGCCTAATAAGAGTTCTATAAAACTGG
AGCTTCTCTAAATGACTGAATCTCACATGTCTCTCTAAAACGCCATCCAAATCTCCTTCTCAACGGAAAAAAATATGAAAAAAACAAGAACTGGCCGTAA
ATGTTAATAAAAAAACATGCCTTTTATCCAAAAAATGAAATCCCTATAA
>LE_HBa0130N01_SP6_64752 (trimmed for quality and cloning vector)
GAGCCCTAGATGAATAGTTGGAAATGACCCCGCACACATCTGAAGATAGCTGCTAGCACCTGGATGTTGGCAACTTCCTTAACTGGGAATAGCATGCTCT
TACTCCAATTAACATGTAGCCCTAATACTACTTCAAAGATCACCAGAATAACTCTCAGATGTTTTACTTGGTCATATCAGCATAACAGAAGATTGAAGAG
TCATCTGTTGTAATCTCAGCACTGTTGTCTCCCTGATTGCAGCTTTAAACCCCTTCAGAAAACACCGTTGTCCTTCACCATCTTAAACAACTGGTTCAGT
CCTTCCACTGCAATAAGAAACAGGAATGGTGATAGAGGATCACCTTGCCTCAAACCTCTCACGGAAGGGAAAGGTCCTTCTGTACACCCATTCACCAAGA
TAGAAAATTTTCACAATCTTTATGTCGAAGAGATTCAATTAATCCATTTCTCACCAAAGGCCATGCCTTTTAGATAGAAATTTAAGAAGGAAGCTCCAAT
TAACATGGTCATGCACCTTCAAGCATAACATCCAACAAAGTTGATTAATTTCTATATTCGCTGTTAAACTTCAAGCATAACATCCCACAAAGTTGACTAA
TTTATATATTTGTTGTCGAATTGTACTCTCAATTAATCAATCAAAG

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.959038
Expected error %
0.0351747
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAP53120.1| Score 72 E Value 9e-12 Identity 11.90% Align. Length 377bp (58.36%) Frame 1
putative retroelement [Oryza sativa (japonica cultivar-group)] ref|NP_920833.1| putative retroelement [Oryza sativa (japonica cultivar-group)] gb|AAK98717.1| Putative retroelement [Oryza sativa]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAE03482.2| Score 69 E Value 3e-11 Identity 31.40% Align. Length 498bp (77.09%) Frame 1
OSJNBa0065O17.7 [Oryza sativa (japonica cultivar-group)] ref|XP_473470.1| OSJNBa0065O17.7 [Oryza sativa (japonica cultivar-group)]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0130N01
Clone
Clone name
hba-130n1
LE_HBa0130N01
P130N01
Clone type
BAC
Contamination
none
Estimated length
77,055
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found