Notice: We have moved solgenomics to a new server and hosting system which caused some instability over the last few days. We apologize for any inconvenience.

Clone Read LE_HBa0130E19_SP6_64356

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0130E19_SP6_64356
Primer
SP6
ID from Seq. Facility
LE_HBa_130_E19-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
543 trimmed for vector and quality, 917 raw
Genbank Accession
DU074645
Sequence
>LE_HBa0130E19_SP6_64356 (raw untrimmed)
CCGGACCTTTTCCCTCTTTACAGGGTATGCAAGAATGAAGATTGCATTAGGGTGCAGNCTCGAGGATTGGCCTATCTGCATGAGGACTCGAGCCCTCGTG
TAATACACAGGGACTTCAAGTCTAGTAACATCTTGCTGGAACATGATTTTACACCAAAAGTTTCAGACTTTGGCTTGGCTAGAACAGCACTGGAGGAGGG
AAACAGACACATCTCCACTCATGTTATGGGCACTTTTGGGTATGCATTATGCACTCTTTCATTGAGTGAAATTTTCTGTCTTGCTATACTTTTACTAGTG
CTGACAGGTGACAACGCTAATATGCAGAAGCATAGTCAAAATTTGAACTAGATGCTTTCGGCTTTTATGATCTTGTTAGAGTAGATTAGAATCTGACATT
GATTAGGAAATGGACTAGTGGTCTGCCTATATGAATTTAGGCAATCCTTCCTTTATGAGCTAACTTTTGGGGTTGAGTTAAGCTTATATGCCATATCTTT
ACATATTATCAGAGCCAAGTCCATCCTTGTTTTGGGCTCCTGGTCCAAGCTTCAGTCTGGGCATGGAAGTGATGAAGAGTGTGGAGAGTAGGTTAGAGTC
CTACATTGGTTGGGGAATGGACTGGTGGGCTGCTTATACGCGTAAACCCGTTAAATTTATATTGATCCGCCTCTGCAATAAGCACATGGCAATAATCACA
CAATNATCTGGCTTGACCCATTATTGCTATTATTTGTGCACTCCTAGCTCCCAAATGAATGATCGCATCTCCGTGAAATGATGTTATTATGGGTATCTCT
CACTCTGACGACAAACATTGATTATACACCCACGCAAAAATTGAGCTGCGCGCCTCTGCAGCAGAGGTAAATATAATAAAAGAGGCATTCATGTATACTA
TTGCCCTCTATGTGCGC
>LE_HBa0130E19_SP6_64356 (trimmed for quality and cloning vector)
TGCAAGAATGAAGATTGCATTAGGGTGCAGNCTCGAGGATTGGCCTATCTGCATGAGGACTCGAGCCCTCGTGTAATACACAGGGACTTCAAGTCTAGTA
ACATCTTGCTGGAACATGATTTTACACCAAAAGTTTCAGACTTTGGCTTGGCTAGAACAGCACTGGAGGAGGGAAACAGACACATCTCCACTCATGTTAT
GGGCACTTTTGGGTATGCATTATGCACTCTTTCATTGAGTGAAATTTTCTGTCTTGCTATACTTTTACTAGTGCTGACAGGTGACAACGCTAATATGCAG
AAGCATAGTCAAAATTTGAACTAGATGCTTTCGGCTTTTATGATCTTGTTAGAGTAGATTAGAATCTGACATTGATTAGGAAATGGACTAGTGGTCTGCC
TATATGAATTTAGGCAATCCTTCCTTTATGAGCTAACTTTTGGGGTTGAGTTAAGCTTATATGCCATATCTTTACATATTATCAGAGCCAAGTCCATCCT
TGTTTTGGGCTCCTGGTCCAAGCTTCAGTCTGGGCATGGAAGT

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.962235
Expected error %
0.723814
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At5g56890.1 Score 114 E Value 3e-26 Identity 24.90% Align. Length 248bp (45.67%) Frame 2
68418.m07099 protein kinase family protein contains protein kinase domain, Pfam:PF00069
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At2g20300.1 Score 107 E Value 5e-24 Identity 22.90% Align. Length 248bp (45.67%) Frame 2
68415.m02371 protein kinase family protein contains protein kinase domain, Pfam:PF00069
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
dbj|BAD81519.1| Score 119 E Value 3e-26 Identity 24.90% Align. Length 248bp (45.67%) Frame 2
protein kinase CDG1-like [Oryza sativa (japonica cultivar-group)]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|NP_916581.1| Score 119 E Value 3e-26 Identity 24.90% Align. Length 248bp (45.67%) Frame 2
putative protein kinase [Oryza sativa (japonica cultivar-group)]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0130E19
Clone
Clone name
hba-130e19
LE_HBa0130E19
P130E19
Clone type
BAC
Contamination
none
Estimated length
73,499
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found