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Clone Read LE_HBa0048E10_SP6_63570

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0048E10_SP6_63570
Primer
SP6
ID from Seq. Facility
LE_HBa_048_E10-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
251 trimmed for vector and quality, 913 raw
Genbank Accession
DU071799
Sequence
>LE_HBa0048E10_SP6_63570 (raw untrimmed)
TTTTTTGTGAAGGGTCCTGCAGGATGTTTTCTGATGCGATCTTTGCTATCATCACATCCCCTCTCTGTACTACGTTTCGAATCAAATGGTATTTTCGCTC
AATGTGTTTTGCCTTATTACTTCATGGTTCCTTTGAATTTGTAACCGCTCCACTATTATCATAAAACATTGTAAGTGGTATTTTTATCGCAGGAACAACC
GCCAAGTCTTTCAGAAAGTTTCTGAGCCACACTGCCTCCTTAGCTGCTACAGAAGCTGCTCATATTCGGGTTCCATAGCAGAATCAGCATCCTATGTTTG
CTTGATGATTCTTTAAACTATGGTTCCACCTCCCAAAGTAAACACATTTCCTAAGGAATACTTTATAGAGTCTTTCTCAGACTGGAAATTTGAGTCTGTG
TACCCTATGGGTACCAACTCATCTTATTGATATACTCACATGTTCATCCCTATTTTTTTTCAGGTACTTGATTATCTGCTTTTTTGTTGTCCAATGTTCT
TATTTATGATTATAATGATATCTGCTAATCATACACTACCACATACAGTTTGTCAGGTTTAATGCATTTACTTGTTATACTTTTTTATATAAAAATTAAA
GAAAAAAAAAAAAAATAAGAATTTCAGGCTTGGTATTAACCTCATATGGTTTAATTGATTTTTATTTAAAATATTTTATATAATTGCGCGTGTGTAATAT
CTAATTTAGATTTTTTTATTAAAATAATGTTATTATTTATTTTTATGTGTAATGTGACTTAAATTTTAATCGATGTTTTTATTAATATTTAATATTGTTC
CTTTTTTTCATGCTTGTTTCTCTTTGTTTTCTTTCGTTTTTCTATTTTTTATTTTTTATTTCTTTTTTTTTTACCCTTTTTCCTATCTTTCCTAATCTCC
TTATTTTTATTTT
>LE_HBa0048E10_SP6_63570 (trimmed for quality and cloning vector)
GTTTTCTGATGCGATCTTTGCTATCATCACATCCCCTCTCTGTACTACGTTTCGAATCAAATGGTATTTTCGCTCAATGTGTTTTGCCTTATTACTTCAT
GGTTCCTTTGAATTTGTAACCGCTCCACTATTATCATAAAACATTGTAAGTGGTATTTTTATCGCAGGAACAACCGCCAAGTCTTTCAGAAAGTTTCTGA
GCCACACTGCCTCCTTAGCTGCTACAGAAGCTGCTCATATTCGGGTTCCAT

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.966676
Expected error %
1.05289
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAB80804.1| Score 91 E Value 1e-17 Identity 17.30% Align. Length 230bp (91.63%) Frame 2
putative retrotransposon protein [Arabidopsis thaliana] gb|AAC26250.1| contains similarity to reverse transcriptase (Pfam: rvt.hmm, score 19.29) [Arabidopsis thaliana] pir||T01860 reverse transcriptase homolog T7M24.7 - Arabidopsis thaliana
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
dbj|BAA22288.1| Score 84 E Value 1e-15 Identity 17.30% Align. Length 230bp (91.63%) Frame 2
polyprotein [Oryza australiensis]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0048E10
Clone
Clone name
hba-48e10
LE_HBa0048E10
P048E10
Clone type
BAC
Contamination
none
Estimated length
109,245
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found