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Clone Read LE_HBa0039C22_T7_61963

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0039C22_T7_61963
Primer
T7
ID from Seq. Facility
LE_HBa_039_C22-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
597 trimmed for vector and quality, 863 raw
Genbank Accession
DU071130
Sequence
>LE_HBa0039C22_T7_61963 (raw untrimmed)
TTGGTCCAAAGCCTTTCCCACATAGTTCGAAAGGATAGACCCTTTTATTCTCTAGTATTGATCTTACCATAGGGTACAAAGCCCTTTTGTTGTGTATTGT
GATGCATCCCGAGTGAGTTTAGGGTGTGTGCTTATGCAACATGTAAAGGTTATTGCCTATGCTTCTAGACAACTTAAGGTTCAAGATACGAATTATCCAT
CTTATGACCTTGAGTTAGCAGCCGTGGTTTTGCGTTGAAAATATGAAGGCATTACTTGTATGGTTTCCATGATGATATCTATACCGACCATAAGAGTCTC
CAACATGTGTTTACCAGAAAGGAGTTGATGTAACATTCCAGAAAATCATACGTTTAATGAAAACCCCATTAGGTTCTTAAGAATGTGTATCATGGGTAAA
TAGGCATCTAAACCAATATTTAGAAATATTGGGCATATTAGAAAATTATGGGCATTGTAGAAAATGTTGGCTTACAGAGTGTTAGCTAAACTCTATGAGT
TTGTGTAATGAATATACCTGAAATGAATACCCTAAGCTAATTAAAAGTCGTCTTTACAAATCACACAAAGTACTAGGCATCCAAGTGTCAAGCCTAGTAC
CATAGCACATGATCATTTAAAATGATCATGTATATTAAGCAGTGCTCAAGGACATAGTGAGGGTTCATTGGGACAATAAGTAACATTCCCAAATGAAACA
TAATAATATTAAGTAAAAAAATACAACAAACCATGTTCCATAACATGTGCAAACGGCGTTCCACGGTCGTTCGATATCCGGGCTTTTTCCCCCCCAAATC
CCACTGGCCATGCCCCAATTCAATCACTGAAAGCCCCGTCCCGTTAACATCTACTTGAGCCTC
>LE_HBa0039C22_T7_61963 (trimmed for quality and cloning vector)
CTAGTATTGATCTTACCATAGGGTACAAAGCCCTTTTGTTGTGTATTGTGATGCATCCCGAGTGAGTTTAGGGTGTGTGCTTATGCAACATGTAAAGGTT
ATTGCCTATGCTTCTAGACAACTTAAGGTTCAAGATACGAATTATCCATCTTATGACCTTGAGTTAGCAGCCGTGGTTTTGCGTTGAAAATATGAAGGCA
TTACTTGTATGGTTTCCATGATGATATCTATACCGACCATAAGAGTCTCCAACATGTGTTTACCAGAAAGGAGTTGATGTAACATTCCAGAAAATCATAC
GTTTAATGAAAACCCCATTAGGTTCTTAAGAATGTGTATCATGGGTAAATAGGCATCTAAACCAATATTTAGAAATATTGGGCATATTAGAAAATTATGG
GCATTGTAGAAAATGTTGGCTTACAGAGTGTTAGCTAAACTCTATGAGTTTGTGTAATGAATATACCTGAAATGAATACCCTAAGCTAATTAAAAGTCGT
CTTTACAAATCACACAAAGTACTAGGCATCCAAGTGTCAAGCCTAGTACCATAGCACATGATCATTTAAAATGATCATGTATATTAAGCAGTGCTCA

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.953645
Expected error %
0.39875
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38790.1| Score 79 E Value 6e-25 Identity 58.20% Align. Length 307bp (51.42%) Frame 3
putative gag-pol polyprotein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAC44142.1| Score 79 E Value 2e-21 Identity 70.60% Align. Length 268bp (44.89%) Frame 3
putative polyprotein [Cicer arietinum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0039C22
Clone
Clone name
hba-39c22
LE_HBa0039C22
C02HBa0039C22
P039C22
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found