Clone Read LE_HBa0039A11_T7_61845

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0039A11_T7_61845
Primer
T7
ID from Seq. Facility
LE_HBa_039_A11-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
7 trimmed for vector and quality, 769 raw
Sequence
>LE_HBa0039A11_T7_61845 (raw untrimmed)
TTTCCGGCCGGTCTGGCGAAGTCCTTTTAACACAATGAATAAAATAAAAAATAAGAGAAAGGAAGATAATTTTCTTTATGAACAATTCGAAGGCAAAATA
AAATCACTAGTTTTTTTTTTAAAAAAAATGATAGAAATGAATATTTTAAAATAACCAATTGAAAATGGACGCAGCAACCGGGTCGAATTGAGGAATATAT
TTGGGCTCATGTATTATGGGCTGAGATTGAGCGATATGCATAGTTCGTTTATTATATGTTATAAATATTATAAAAGGTTATAAAATTGTTGTACTATTTA
TGTTTATTGATTATTATATTTATGTAAGTATATATGACATAAAGATTATGATTGGGCATTTTTTATGGGGTACGCGTTGCGATGCTCGTTATATATGAAG
GACTAAGGAATATGTTTGTTATTACTTGAGATTTTTGTTAATGTATTTTGGGTCGTCTTCTATATTTTATCGTACTCTCTATACACTGGGAGTAGTTTGA
ACCAACTACTGCGTCCTCCCACACCGACCACGTATGAAGTTATGTATTAACTTTATGTACTGTCTGTTGTATGATCTTATTATATGATTATATGCTGACT
ATTATGAATCTCTTGATGTTTCTTTGTTTTGATTAATTTTATATAATTATGCTTTCTTATGTATTTATTTTTTACTTATTTGTTAATTGTTATTTATATC
TATTACTTGCTTTCTCTATTATGTATGTTGTATGTCTCTGTTTTTTATTATTATTTTTGTTTTATTTCT
>LE_HBa0039A11_T7_61845 (trimmed for quality and cloning vector)
TTTTTTT

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
 Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.506286
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0039A11
Clone
Clone name
hba-39a11
LE_HBa0039A11
C03HBa0039A11
P039A11
Clone type
BAC
Contamination
none
Estimated length
119,950
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found