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Clone Read LE_HBa0039A08_SP6_61838

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0039A08_SP6_61838
Primer
SP6
ID from Seq. Facility
LE_HBa_039_A08-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
5 trimmed for vector and quality, 556 raw
Sequence
>LE_HBa0039A08_SP6_61838 (raw untrimmed)
TTTATAACTTCTCAATGATGCTCATGTTTATGCCACGGCCAGTGATAGTCATAGTGAAGGAGAAAAATTTTCATTGCGATCTTCGTGTTCATCTCTATGG
TTAGATATCTAATTCTAACAGGTTGGAACTATCTGAAAAGGACGCTTATTGAACGATTAACCATTTACATATAGGGGCTGAAGATAGTGATGTTCAAGAT
CTAAATTTGGTGCCTGAAAATTTTGTCCTTCGTCTGGATGTGTAATATGACCACTCTTCCCCCCATCAAACTTTCTGTTGTTCAACTGATCCTGGGGAAT
TTCACCAGAACCTCGGTGTGGATGACACTTACTCTTGACAACGCATAGATTTGTCGACCCAAAACTAACTATATAACAGACAAAGGATTAATTGTTGACT
ATTCATGTATGATGTTAGGTGATAAGCATACTCTTGATAGACTTCCCTATGCTATACACAGCCCAAATCTGATGTGCAAGTTGAGACTTTGGCTATTGAT
GGACTACAATTTGTAGGATAAAAAAGAGAGTGATTTGCAACCTTGCGATCCTGTCG
>LE_HBa0039A08_SP6_61838 (trimmed for quality and cloning vector)
AGATT

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
 Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
1.18745
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0039A08
Clone
Clone name
hba-39a8
LE_HBa0039A08
P039A08
Clone type
BAC
Contamination
none
Estimated length
123,582
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found