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Clone Read LE_HBa0012I12_SP6_6166

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0012I12_SP6_6166
Primer
SP6
ID from Seq. Facility
LE_HBa_012_I12-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
479 trimmed for vector and quality, 922 raw
Genbank Accession
DU025704
Sequence
>LE_HBa0012I12_SP6_6166 (raw untrimmed)
AAATGATTTNCAATCATGCTATTGATAANANNNNNNNNNNNNNNNNNNNNNNNNNNNANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAANNNNAAANG
NNNCNNNNNNGNNNNCNNNANANNANNNNNGNCNGNNGNAANCNGNAGCCAACCNGNCNCNAANCATNCNAACTTTCNCCAAGGCCNCAAGAATGATCTC
TGGACCCAAAATAGATGACTCTCCAACCTCGAACCACCCAACTGGAGATCTACACCTCCTACCATACAATGCCTCAAATGGTGCCATCCCAATGCTGGAG
TGGTAGCTATTATTATACGAGAACTCTATCAAAGGTAGATGGTCATCCCAATTACCTCTAAAGTCAATCACACACGCTCTCAACATGTCCTCCAATGTCT
GAATAGTGCGCTCTGCCTGCCCATCTGTCTGAGGATGAAAGGCAGTGCTAAGTTTCACCTGCGTGCCTAAGCTTTTCTGGAAATATCTCCAAAAATGCGA
AGTAAACTGAGCTCCTCTATCTGAAATAATAGACAAAGGAATCCCATGCCATCTCACAATCTCATCAATGTAGAGTCTCGCGTAATCCTCGGCCCTGTAA
GTGGACTTCACAGGGATAAAGTGGGCAGACTTAGTCAGTCTGTCCACAATAACCCATATAGAATCATGCTGCCTCCTAGTCCTCGGAAGACCAACAACGA
ATTCCATATTAATGGGCCTCCCATTTCCAAGTCGGAACCTCCAATAATCTGAGTCAAACCCCCAGGCTTAAGATGCTCTTGCCTTTACCTGGCCGAAAAA
TTAGGAAACTTTACCCACATAAGTTCTGCAAATAATCCCTTCTTTCTTGCCCCTCCCCCACCAAAATAAACCTTGCCTTTAAGAATTCAATTCAATACCT
TTTTTTTGGTTGGGAAACCCCC
>LE_HBa0012I12_SP6_6166 (trimmed for quality and cloning vector)
GAATGATCTCTGGACCCAAAATAGATGACTCTCCAACCTCGAACCACCCAACTGGAGATCTACACCTCCTACCATACAATGCCTCAAATGGTGCCATCCC
AATGCTGGAGTGGTAGCTATTATTATACGAGAACTCTATCAAAGGTAGATGGTCATCCCAATTACCTCTAAAGTCAATCACACACGCTCTCAACATGTCC
TCCAATGTCTGAATAGTGCGCTCTGCCTGCCCATCTGTCTGAGGATGAAAGGCAGTGCTAAGTTTCACCTGCGTGCCTAAGCTTTTCTGGAAATATCTCC
AAAAATGCGAAGTAAACTGAGCTCCTCTATCTGAAATAATAGACAAAGGAATCCCATGCCATCTCACAATCTCATCAATGTAGAGTCTCGCGTAATCCTC
GGCCCTGTAAGTGGACTTCACAGGGATAAAGTGGGCAGACTTAGTCAGTCTGTCCACAATAACCCATATAGAATCATGC

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.963179
Expected error %
0.134557
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38724.1| Score 286 E Value 2e-76 Identity 26.80% Align. Length 476bp (99.37%) Frame 3
putative retrotransposon protein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38744.1| Score 285 E Value 4e-76 Identity 26.60% Align. Length 476bp (99.37%) Frame 3
putative gag-pol polyprotein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0012I12
Clone
Clone name
hba-12i12
LE_HBa0012I12
C03HBa0012I12
P012I12
Clone type
BAC
Contamination
none
Estimated length
112,110
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found