Clone Read LE_HBa0135M11_T7_61653

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0135M11_T7_61653
Primer
T7
ID from Seq. Facility
LE_HBa_135_M11-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
669 trimmed for vector and quality, 807 raw
Sequence
>LE_HBa0135M11_T7_61653 (raw untrimmed)
ACTTGGATCCCGGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTCATCTTTGGGGAAAAAAATGTAACTTGGCAGAATGTCCAGGGGCAAACTG
GTCATTGAGATAGAATTTTGTGTCTTGCTTAGCATGATCAGGTCACCAATCTGTGACATAGCTCAAAGACCGAATCCATTTGATCTCTAAAAAGGATTAC
TAATCCTTTACTTTTCAAGGAATCCTTCATCTTCAAATTTTTCGACCTTGGTTTAATAGGGGCGCAAGTCAGAACTCAGAAGGATTGAGAAATCGAGAAC
CATCTGATCATCAGGGCTGTAGGCACTACTAATTCTACAGATATATAGAAGATGCATGCATACCTTTTACCATCTGGGATGTGATTCTCCATAGGTTCTC
CAATACTCTTGTCCATAGTGCTTACTACTACTTTTACCAAATGGAGAACTGTAAAAGTTAGATTGTCTTCGTGACCAGTTCGTCCTCTCAAATGGAGAAG
AATAAGAATCAGAAGGTCTGCAAGAACCGCTGTTTCTCCCTCTTTCCCTTTGAACATCCCTTATTTCTTCTTCTAAATCATGTTTTGCACGCTGCAACAC
AGAAATAATACTGAGGTTAGTAACTTACCTACTACACACGAGAAACAATAAACTCTTTCCCAATTTCATTTGTCCCCAACTCTTTCCCGATCCGGGAATT
CCTAAAATGGGCCAAGTTTACATACTCATATAATTGAGATGGAGTTTTCCCCAAGATTGATGTTCCGAATGTTATCCCAAAACTAATAATCATTCAAAAA
AATTAAG
>LE_HBa0135M11_T7_61653 (trimmed for quality and cloning vector)
AGCTTCATCTTTGGGGAAAAAAATGTAACTTGGCAGAATGTCCAGGGGCAAACTGGTCATTGAGATAGAATTTTGTGTCTTGCTTAGCATGATCAGGTCA
CCAATCTGTGACATAGCTCAAAGACCGAATCCATTTGATCTCTAAAAAGGATTACTAATCCTTTACTTTTCAAGGAATCCTTCATCTTCAAATTTTTCGA
CCTTGGTTTAATAGGGGCGCAAGTCAGAACTCAGAAGGATTGAGAAATCGAGAACCATCTGATCATCAGGGCTGTAGGCACTACTAATTCTACAGATATA
TAGAAGATGCATGCATACCTTTTACCATCTGGGATGTGATTCTCCATAGGTTCTCCAATACTCTTGTCCATAGTGCTTACTACTACTTTTACCAAATGGA
GAACTGTAAAAGTTAGATTGTCTTCGTGACCAGTTCGTCCTCTCAAATGGAGAAGAATAAGAATCAGAAGGTCTGCAAGAACCGCTGTTTCTCCCTCTTT
CCCTTTGAACATCCCTTATTTCTTCTTCTAAATCATGTTTTGCACGCTGCAACACAGAAATAATACTGAGGTTAGTAACTTACCTACTACACACGAGAAA
CAATAAACTCTTTCCCAATTTCATTTGTCCCCAACTCTTTCCCGATCCGGGAATTCCTAAAATGGGCCA

This is probably not a useful sequence.

Problems:
  • Probable foreign DNA contamination
 Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.971921
Expected error %
0.323054
Sequence Annotations 
Automatic Annotations
Nicotiana tabacum Chloroplast (screening/organelle/nicotiana_tabacum_chloroplast)NCBI BLAST
gi|11465934|ref|NC_001879.1| Score 100 E Value 1e-22 Identity 93.90% Align. Length 65bp (9.72%) Frame 2
Nicotiana tabacum plastid, complete genome
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0135M11
Clone
Clone name
hba-135m11
LE_HBa0135M11
P135M11
Clone type
BAC
Contamination
none
Estimated length
67,066
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found