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Clone Read LE_HBa0135A21_SP6_61096

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0135A21_SP6_61096
Primer
SP6
ID from Seq. Facility
LE_HBa_135_A21-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
570 trimmed for vector and quality, 769 raw
Genbank Accession
DU073291
Sequence
>LE_HBa0135A21_SP6_61096 (raw untrimmed)
AATTGACTCCACACGATGCCACAGCCAAGAAAATTTCTGATCTGTGGCATAGGACCAGATGAATACAATCGAATCTCATCTTGTCAAGATGCCAAAGCCA
TATGGAAAACACTACAAACCGCTCATGAAGGAACAACACAAGTCAAGAAGTCTGAAATTGATAACTTAAACAGGCAATATGGGTTGTTCAGGATGGCAGA
GGGGGAAACTATTCAAGACATGCACACCAGGTTCACCTCCATCATAAATGAGATGTACTCCTTGGGAGAGATAGTTCCTAATGGAAAGGTGGTAAGGAAA
CTCTTGAGTGTCCTTCCTGAAACTTGGGAAAGCAAAGTCGAGGCTATCACTGAAGCCCGCGACCTAGACTCACTGGCCATGGATGAGTTGATTGGTAATC
TCATCACATATGAACTCAAGAAAAACCAAGAAAAGGAAATTGGAGGAAAAAGGAAGGAAAGGAACCTGGTTCTAAAGGCTACTACATCAGATGATTTTGA
AGATGAAAATATTGCCCTCATAACCAAAAGGTTCACCAGAATGCTGAAGAGAGGACAGGCCTTTCAAAAGAAAACTTCTCAAAAAAAATCTGAAAAAGAC
CAGGTTTGTCATAAGTGTGGGAGCCCAGATCACTTCATCAAATTTTGTCCACTTTGGGCTTTTAGATCAGAAAAATACAAACTTTGAGAAATGGCAAAGA
CTCCAAGAATGATAAGTTCGTCCCCTTCAACCAAAGAATGACCACCCAAGAAGCCAATATTTCCATGAA
>LE_HBa0135A21_SP6_61096 (trimmed for quality and cloning vector)
ATCTGTGGCATAGGACCAGATGAATACAATCGAATCTCATCTTGTCAAGATGCCAAAGCCATATGGAAAACACTACAAACCGCTCATGAAGGAACAACAC
AAGTCAAGAAGTCTGAAATTGATAACTTAAACAGGCAATATGGGTTGTTCAGGATGGCAGAGGGGGAAACTATTCAAGACATGCACACCAGGTTCACCTC
CATCATAAATGAGATGTACTCCTTGGGAGAGATAGTTCCTAATGGAAAGGTGGTAAGGAAACTCTTGAGTGTCCTTCCTGAAACTTGGGAAAGCAAAGTC
GAGGCTATCACTGAAGCCCGCGACCTAGACTCACTGGCCATGGATGAGTTGATTGGTAATCTCATCACATATGAACTCAAGAAAAACCAAGAAAAGGAAA
TTGGAGGAAAAAGGAAGGAAAGGAACCTGGTTCTAAAGGCTACTACATCAGATGATTTTGAAGATGAAAATATTGCCCTCATAACCAAAAGGTTCACCAG
AATGCTGAAGAGAGGACAGGCCTTTCAAAAGAAAACTTCTCAAAAAAAATCTGAAAAAGACCAGGTTTGT

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.949507
Expected error %
0.165104
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|XP_468615.1| Score 105 E Value 7e-22 Identity 10.90% Align. Length 569bp (99.82%) Frame 2
putative copia-type pol polyprotein [Oryza sativa (japonica cultivar-group)] gb|AAP12977.1| putative copia-type pol polyprotein [Oryza sativa (japonica cultivar-group)]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAC18777.1| Score 105 E Value 9e-22 Identity 12.20% Align. Length 524bp (91.93%) Frame 2
gag-protease polyprotein [Glycine max] pir||T06419 gag-proteinase polyprotein - soybean retrovirus-like element
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0135A21
Clone
Clone name
hba-135a21
LE_HBa0135A21
P135A21
Clone type
BAC
Contamination
none
Estimated length
124,219
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found