Clone Read LE_HBa0124G18_SP6_59074

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0124G18_SP6_59074
Primer
SP6
ID from Seq. Facility
LE_HBa_124_G18-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
716 trimmed for vector and quality, 944 raw
Sequence
>LE_HBa0124G18_SP6_59074 (raw untrimmed)
CCAGATTTTTTGGGAGAGGTGATTCAGGCAAATATGAAATGGAAGGTCATTGGTCAACTAGCATGGTGACCCACTTTTGTGGAACTAGCCTTTGGAGAAC
CATAAGGAACCTCCTTCCAAAACTTAGAGGGAATTGCAAAATCAAAATTGGAAATGGTGTGAAGGTCTCATTTTGGGAAGATAACTGGCTGGAACTAGGT
CCCTTAAAAACACTTTTCCCTGATGTGTTCATCCTCAACCAACAAGAGAGGGCTACTGTGGCAGAGGTTTGGTCAAACCAAGGATGGAACCTAAGGTTTA
GAAGACCTTTCAATGATTGGGAGATCCAGAGAGTAGTAGAATTCTAGAGAACTCTCGAACAATTCAGAGGAGGAAGCAACGTCCAAGACTGCCTGGAATG
GAAGGATCACAAGTAAGGAAGATTCAGTGTCAAGGGGGCTTACAAAAAGTTCAACCCTTTCAATAACCAAATTAATGGGTGGCCCTGGAAAATGATTCGG
AAAGCCAAAATTCCATATAAAGTGTCTTGTTTTACTTGGCTATTTGCTAACCAGGCTGTTTTGACTCAGGAAAATCTCATGAAGAGGGGTATCCAGTTGA
GCCCTAGATGTTTCCTATGTGAGGAAAAGGCTGAGACAGTGACTCACCTGTTTCTTCACTGTAAGGATTACCAACCAGCTGTGGGACCTTTTCATCAATA
AAAAGGGATTGAATTGGGTGGAGAGTAACTCAAACCGAAGATATGGAGTAGCTATTCCAACATCTCTGGTCATAGGGAGAGATGGAAAATCCATCCCAGC
TTGTTTTTGGTGGTCAACGTGGTAAGAAAGGAACCTTACATGTCATTAGCACAAGAACAACACTATTCAAAAAAGAAAAAGATTTGCTGGGGTTGTTTTT
TTTTGGCAAAACCAAGATATATGGCAATCTACAACCGTTATCAT
>LE_HBa0124G18_SP6_59074 (trimmed for quality and cloning vector)
GATTCAGGCAAATATGAAATGGAAGGTCATTGGTCAACTAGCATGGTGACCCACTTTTGTGGAACTAGCCTTTGGAGAACCATAAGGAACCTCCTTCCAA
AACTTAGAGGGAATTGCAAAATCAAAATTGGAAATGGTGTGAAGGTCTCATTTTGGGAAGATAACTGGCTGGAACTAGGTCCCTTAAAAACACTTTTCCC
TGATGTGTTCATCCTCAACCAACAAGAGAGGGCTACTGTGGCAGAGGTTTGGTCAAACCAAGGATGGAACCTAAGGTTTAGAAGACCTTTCAATGATTGG
GAGATCCAGAGAGTAGTAGAATTCTAGAGAACTCTCGAACAATTCAGAGGAGGAAGCAACGTCCAAGACTGCCTGGAATGGAAGGATCACAAGTAAGGAA
GATTCAGTGTCAAGGGGGCTTACAAAAAGTTCAACCCTTTCAATAACCAAATTAATGGGTGGCCCTGGAAAATGATTCGGAAAGCCAAAATTCCATATAA
AGTGTCTTGTTTTACTTGGCTATTTGCTAACCAGGCTGTTTTGACTCAGGAAAATCTCATGAAGAGGGGTATCCAGTTGAGCCCTAGATGTTTCCTATGT
GAGGAAAAGGCTGAGACAGTGACTCACCTGTTTCTTCACTGTAAGGATTACCAACCAGCTGTGGGACCTTTTCATCAATAAAAAGGGATTGAATTGGGTG
GAGAGTAACTCAAACC

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.947186
Expected error %
0.25499
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At4g11710.1 Score 71 E Value 5e-13 Identity 9.50% Align. Length 581bp (81.15%) Frame 2
68417.m01869 hypothetical protein
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At5g06805.1 Score 68 E Value 6e-12 Identity 8.80% Align. Length 614bp (85.75%) Frame 2
68418.m00769 reverse transcriptase-related low similarity to reverse transcriptase [Arabidopsis thaliana] GI:976278
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT40556.1| Score 126 E Value 6e-28 Identity 13.80% Align. Length 500bp (69.83%) Frame 2
hypothetical protein PGEC542.21 [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|NP_914522.1| Score 105 E Value 1e-21 Identity 10.60% Align. Length 614bp (85.75%) Frame 2
unnamed protein product [Oryza sativa (japonica cultivar-group)]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0124G18
Clone
Clone name
hba-124g18
LE_HBa0124G18
P124G18
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found