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Clone Read LE_HBa0012C12_SP6_5878

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0012C12_SP6_5878
Primer
SP6
ID from Seq. Facility
LE_HBa_012_C12-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
13 trimmed for vector and quality, 939 raw
Sequence
>LE_HBa0012C12_SP6_5878 (raw untrimmed)
AAATGGTTTTCAATNAACTATGTGAGANANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCNNTTNNNNNNNN
NNNNNNNNNNNNNNGANAANNANNNNNNNANANNANGGNNAAANGANNNNANANNGNNANNNAANAANANNNNCAANGNANNNNGNANNNNNANGNNGGA
AGGNANNNNAAANAAGNNNNNNNNAGAAAGGGAGANGGNANANNGGNNNAAGNANAGAANNGNAANNNNNNAGGGNAAGNGGGAAAGANGAAANNNNNNG
GAGNNGNANNAGNAGGAANANANNNGNNGNNAGGAAANNGANNGNNNAGAGAAAAGGNNNNNGANGNNAGAANNGAANNNNNNNNNNNANNGGGAAGGGG
GAGAANAGGNGANNGNNNNNAGNNNNAGANNNNNNNANGNNGNNNGGNNNGNNANNNGANNNNNGNGNANAGNNNNNANNNNNNNNNNNANNNGNGANNA
GNNNAGNAANANGNAANNNANNGNNAAGGGAAAAGAAAAANNAGNGAANGAGNNNNNAANNNNNANNNNAGANGNAAANGGANNAAGNAGAAANNNAGNN
NNGGNGNAANAANNNGNNNNNNNNNNNNNNGAGNNNGNAAAAAGGNAGAAAAGANAAGGGNAAAGNNNAAAAGGGGAAAGAGAAAAAGGGAAAAAAAGGG
AAGAAGAAGAGGGAGGGGGGGNAAAAGAAAGAAGGGGAAAGGGGGAGGGGAAAGGGAAAAAGGGAAGAGAAAGGAGGAAAAGGAAGAAGAAGGGAAAGGA
AAGAAAGGGAAAAAAAGAAGAAGAAGGGAGGAAAGGGAAGAAGGGGGNNAANGAGGAAAAGGGGGGAGGGAAAAAAAAAAAAGAGAAAGGGGGGGGGGAA
AAAAAAAAAAAAAAAAAAAAAGGGGGGANNAAAAAAGNA
>LE_HBa0012C12_SP6_5878 (trimmed for quality and cloning vector)
GGGAAGGGGGAGA

This is probably not a useful sequence.

Problems:
  • High predicted error rate
  • Low complexity
  • Short cloning insert
 Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
3.91676
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0012C12
Clone
Clone name
hba-12c12
LE_HBa0012C12
P012C12
Clone type
BAC
Contamination
none
Estimated length
104,895
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found