Notice: We have moved solgenomics to a new server and hosting system which caused some instability over the last few days. We apologize for any inconvenience.

Clone Read LE_HBa0123N06_T7_58619

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0123N06_T7_58619
Primer
T7
ID from Seq. Facility
LE_HBa_123_N06-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
454 trimmed for vector and quality, 900 raw
Sequence
>LE_HBa0123N06_T7_58619 (raw untrimmed)
ATAACCTGGGTCCGGGGGTTCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTTATGCCAAGTTCTCTAAGTCCGTTTTTGGGCTAGATGCTGTGTCCTTC
TTGGGGCACGTGCCTTTTAAGGATGGAGTGATGGTGGATCCTTCTATGATTGAGACAGTGAAGAGTTGGGTAAGACCTACTAATGTATCGGAAATAAGGA
GCTTTGTTGGGTTAGCAAGCTACTAACCCCTATTTGTCAAGGGATTCTCTTCTATTGCTTCCCAATTGACGAACTTGACTAAGCAGAATGTTCCATTTGT
ATGGTCGGACTAATGTGAGGAAAGCTTTCACAAGCTCAAGACTTTGTTGACTACTGCACCTATCCTTACCTTGCCACTAGAGGGTGATAACTTCTTCGTT
TATTGTGATGCATCCTATTCTGCTTTGGGTGCCGCATTAATGCATCATAAGAATGTGACCGTCTATGCTTCCTAACTTGATCATGAGCATTAGCATAACT
ACTCTTCTCGTGATTTGAAATTCTCTGCAGTAAAGACTGCTCAATTGCATTGAACATACTGATTGTAAGAAGATAAGGGCCTATCCTCATATTTTATGTC
CGTACTACATTCTTCCCTCACTATGATGGTTTCCCCGGTCACAAATCTAATCAGCAGATACCTCTTATCAGAAAAAGTGGTGGAGTATTATTAATTTCAA
TAAAGGCTTTTTTGCTGTTCATTTCCTCTTTATAATACCCCCCTGAAGTTGAATTACACCCTTACTGAAAATTCCGAGCGCCCCCGTTTATAATTCTTAT
CAAGTCTCCGAAGTTACTCCATTTCACACTACCAAACCAGGGGGACTATTCTTTTCTATGTTGGGAACCAATGACTCCAATGTTGGGCAAAAACCCATAT
>LE_HBa0123N06_T7_58619 (trimmed for quality and cloning vector)
AGCTTTATGCCAAGTTCTCTAAGTCCGTTTTTGGGCTAGATGCTGTGTCCTTCTTGGGGCACGTGCCTTTTAAGGATGGAGTGATGGTGGATCCTTCTAT
GATTGAGACAGTGAAGAGTTGGGTAAGACCTACTAATGTATCGGAAATAAGGAGCTTTGTTGGGTTAGCAAGCTACTAACCCCTATTTGTCAAGGGATTC
TCTTCTATTGCTTCCCAATTGACGAACTTGACTAAGCAGAATGTTCCATTTGTATGGTCGGACTAATGTGAGGAAAGCTTTCACAAGCTCAAGACTTTGT
TGACTACTGCACCTATCCTTACCTTGCCACTAGAGGGTGATAACTTCTTCGTTTATTGTGATGCATCCTATTCTGCTTTGGGTGCCGCATTAATGCATCA
TAAGAATGTGACCGTCTATGCTTCCTAACTTGATCATGAGCATTAGCATAACTA

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.971795
Expected error %
2.51626
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT66771.1| Score 149 E Value 2e-35 Identity 17.60% Align. Length 449bp (98.90%) Frame 1
putative polyprotein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38745.1| Score 147 E Value 7e-35 Identity 17.70% Align. Length 422bp (92.95%) Frame 1
putative polyprotein, 3'-partial [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0123N06
Clone
Clone name
hba-123n6
LE_HBa0123N06
P123N06
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found