Clone Read LE_HBa0123M20_SP6_58598

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0123M20_SP6_58598
Primer
SP6
ID from Seq. Facility
LE_HBa_123_M20-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
0 trimmed for vector and quality, 924 raw
Sequence
>LE_HBa0123M20_SP6_58598 (raw untrimmed)
CCAAGGATTTTTTGCCCGCCGGAGGACTCGCGAAGATCCCCGAGGACGGAGCTCCAATTCATACTATAGTGTGTCCTTTTACTATTCGCTGAACGACGAT
TAACAACACCAAGGCTGTGCAAACCCTGACAGTTACCCCACGACATCATCTTGCATCTCGTCCTCCATTCCCCAGATGGTGAAATAACGGATAGGTCCGA
TCCTATCACCCTTACTGTACGATCTGCTTACGGAAGAGTGAATGGGGCCTGATGTTACTTTTTCTCCATACACGTATGTGCCCCATCTCGAACTATACAT
GGTGTGCTCTCAGTGCTATATGCTCTGATGACGAACAAATAAGCCAGCCACGATGCCCTCCGTCATCGGTAGACACAAACCTGATGCTACCTCTCTAACA
AAAACTTAAGCAATTGTTTGTTTAAAAAAAAATTTATGTTCCCCTTAGCTCGCAATGTCAGTGAGTATGGCGGGAATTTCTATCCCCCTCGCCGAAGCTA
TTTATGGGGCGATAACAAGAGTGAACCAGCTGCTATTGAGGTATTGGATTGTGACTTGTCCACTAGGCAATATACAAATTCAATCTTCAGACGCCACAGA
TTTGAATTTTTCCGCATCCTCTTTTTATAAGTCAAGCTTCTCGCCCGATACCCTCCATGTTGCCTCACTTATCTATCGATTGTTTCCTGAAATCCCTTCT
CGTTTCCTCACACACCTCAACCTCCTATGCGAAAATCCTAGTATATCACACAATAAACTCCTATCTGACCACAACGTATCTAGACTCCAAACAAACGCCC
TCAAACCTAAAACAATCACACACCCCCATTCACTTTTCTCATGACACATTTATCTCTACTCCTTAGTTCATATATTCTATTATTAATTGGCCAACATTAA
TATAAATCTCTCACTCTTTCCATA
>LE_HBa0123M20_SP6_58598 (trimmed for quality and cloning vector)

This is probably not a useful sequence.

Problems:
  • Low complexity
  • High predicted error rate
  • Short cloning insert
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
3' read, short insert
Quality trim threshold
14.5
Sequence entropy
not recorded
Expected error %
100
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0123M20
Clone
Clone name
hba-123m20
LE_HBa0123M20
P123M20
Clone type
BAC
Contamination
none
Estimated length
108,539
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found