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Clone Read LE_HBa0123E06_SP6_58186

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0123E06_SP6_58186
Primer
SP6
ID from Seq. Facility
LE_HBa_123_E06-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
3 trimmed for vector and quality, 898 raw
Sequence
>LE_HBa0123E06_SP6_58186 (raw untrimmed)
CCGCGGATTATTCAAGGAGCGGAAGGGAGCTGAGAGAGATACGAACTTAGTACTCCTATTTCGAGATGTACAACTAGTTGAAATACCCCCTTGGAGGTGG
TTGGGTGGTGGGTATTTATTGTCAACAATAGGCCCCCTTTGGGAGTAGGCACAGAGTGAGTAAAATATAAATGCAGAATTGTACTATTGACTCCATTCTG
GATTTCGTTGGATGGGGGCGAAGCGAAAGGTGTAGATAGGCTGAGGAACTATTAATGCGCCACAAATAGACGAAACAGTATAACGCGACGTCATTGATTC
AGAGATAGCATGCACAGAAAGAAGCTACTTTAGACATTTGGCCTCTTCCATGTCTGGTGACTTCTTCGGTATCATAATTGGCGTTGGTTTCGTCGTGTGA
ATCAGTTCGTCGTGTTGTTATAATCGGTCACGAAATGTATGTGCGCGCAACTCATAAGACTATCTAATTAGGTACTTACACTGGGCTTCGCTCGGGGTGT
TACGTCCTTCTCTGACCGTGGTCTGACCGTTTGCCTCTTATTTCTGTCATCTTCTATAGCCCCTTTGGTGCCTTACCCCCTCATAAAACTTGGGGAATAT
CAAGACGCAATATGAGTCATGTTCATGGGGATGGCAGCGATATCACTGGAGCGATCTGCTTCCTCCGGCTAGCAAACTACTCTTCCCGTTTCTACCACCT
TATCTAGCTCGCCTACACATCCACGGGCGTCCGCCGCCCCCACTCTGTCTAGCCGACCTTGCTGTCTTCCCTCCCGTCTTCTACTCATTGCGGGCTACCT
CCTCTGTGCGATGATTCACGTGTAAGCGCTGGCGTCGTTCGACTCTCCACTCACTCCTTTCACCAAAAACGAACAGTCTCCTCACGGGACGCAGCACC
>LE_HBa0123E06_SP6_58186 (trimmed for quality and cloning vector)
TAC

This is probably not a useful sequence.

Problems:
  • High predicted error rate
  • Low complexity
  • Short cloning insert
 Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
5.66036
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0123E06
Clone
Clone name
hba-123e6
LE_HBa0123E06
P123E06
Clone type
BAC
Contamination
none
Estimated length
65,357
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found