Clone Read LE_HBa0122M11_SP6_57812

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0122M11_SP6_57812
Primer
SP6
ID from Seq. Facility
LE_HBa_122_M11-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
711 trimmed for vector and quality, 796 raw
Sequence
>LE_HBa0122M11_SP6_57812 (raw untrimmed)
GGTTATGCCACTGCTACTCTAAGATTGAACGTGAAATTTGCCGGTTGCTAGTAAGTAAACTAACGGCATCTTGAGATGCCTTTGCAAGGTTATCTTCTTG
GATTCCTTACTATCTGTTAAGCTGCAAAAAGGTTGATCCAAAATCTTGTCTTTGGCAAGCTAATCCATTCTTACCACTTGGTCTCCATTTTTCCTCCTCT
TCTTTTGGATCTTTCTGAATATAGTTCAACATGATTTGACATAATGACCGCTTTCCCCAAAACTGATTGTTGTTTCTTGTGTTGATCAGTCCACAACGGA
TCTGAAGGCAGACCCTGAAAACCCCAAGTCTTGGCCCAGATTTATTCTCAGGGTAGATCAGTACATGTCTAACTATTTAACTTCAGGAAAGAGGACAAGG
CTAGCAATCTTGAGTAGTTCTCTCAAAGTTTGGCTTCTTCTAAAGGTATGCTTAGTCATTTTATCCATTCTCATAACAAAATATCACTTTTATTTCTGTA
TTTGCTGATTTTGTAAGCTGTGATTAACCAGGTTGCTAGAGGTTTTACCAAAGGGACCTTTGAGCTAAAACCTTTAACAGGCGACAAGGAGTACAAGGGT
GATGAACGTGAAACATCTATTTCAGTGTTGCGACCAACAGAGGGTGGATTTCACCCCCCTCGGAAAAAAGTCACCATCTTCCCCATCAAAAAGTGGAGTA
GTGGAAAGTGATGTTACCTCCATTAAGAATCATCTGTACAGGTCTCAAAAAACAATGCAAATCCACATATGGGTAGCAAAAATTTATTACCCATTC
>LE_HBa0122M11_SP6_57812 (trimmed for quality and cloning vector)
TACTCTAAGATTGAACGTGAAATTTGCCGGTTGCTAGTAAGTAAACTAACGGCATCTTGAGATGCCTTTGCAAGGTTATCTTCTTGGATTCCTTACTATC
TGTTAAGCTGCAAAAAGGTTGATCCAAAATCTTGTCTTTGGCAAGCTAATCCATTCTTACCACTTGGTCTCCATTTTTCCTCCTCTTCTTTTGGATCTTT
CTGAATATAGTTCAACATGATTTGACATAATGACCGCTTTCCCCAAAACTGATTGTTGTTTCTTGTGTTGATCAGTCCACAACGGATCTGAAGGCAGACC
CTGAAAACCCCAAGTCTTGGCCCAGATTTATTCTCAGGGTAGATCAGTACATGTCTAACTATTTAACTTCAGGAAAGAGGACAAGGCTAGCAATCTTGAG
TAGTTCTCTCAAAGTTTGGCTTCTTCTAAAGGTATGCTTAGTCATTTTATCCATTCTCATAACAAAATATCACTTTTATTTCTGTATTTGCTGATTTTGT
AAGCTGTGATTAACCAGGTTGCTAGAGGTTTTACCAAAGGGACCTTTGAGCTAAAACCTTTAACAGGCGACAAGGAGTACAAGGGTGATGAACGTGAAAC
ATCTATTTCAGTGTTGCGACCAACAGAGGGTGGATTTCACCCCCCTCGGAAAAAAGTCACCATCTTCCCCATCAAAAAGTGGAGTAGTGGAAAGTGATGT
TACCTCCATTA

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.968376
Expected error %
0.141345
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|XP_481608.1| Score 57 E Value 9e-16 Identity 42.60% Align. Length 397bp (55.84%) Frame 1
putative endoribonuclease E [Oryza sativa (japonica cultivar-group)] dbj|BAD03665.1| putative endoribonuclease E [Oryza sativa (japonica cultivar-group)]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0122M11
Clone
Clone name
hba-122m11
LE_HBa0122M11
C02HBa0122M11
P122M11
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found