Clone Read LE_HBa0122H07_SP6_57564

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0122H07_SP6_57564
Primer
SP6
ID from Seq. Facility
LE_HBa_122_H07-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
676 trimmed for vector and quality, 833 raw
Sequence
>LE_HBa0122H07_SP6_57564 (raw untrimmed)
CGTTAGCGTTCTCCTATTATGCTTCCAGCCCAGACACCCTTTGTAAAGTGTGCTAAGGCCTCCATAACTCTATTCACAGACTCCATATTACCTTTGCAGA
AAAAACATCAAATCATCCGCAAAAATAATATTAGTAAGCTTCAATTTCTTACACATAGGGTGAAATCTAAATTTTGGTAAATCCTCCATACTGTTAAGAA
TTCTAGACAAATATTCCATCACTAGCACAAATAGTAATGGTGATACAGGGTCCCCTTAACTAAGCCATGGTTTTCACCATTCACTTTGACTGAAAATTCT
AGAGTTGTTACACAAAGCATAATCCATTTGACAAACTCCCCAGGAAACCCAAACCCAAGCAACATCTCCTTTAGGAACTCCCAACTAACCATGTCGTAAG
ATTTCCTCAAATCTATTTTCATTAGGCATCTTGGAGTAGCATTTTTCCTATTATTGTGTCTCAATAGGTCATGGAAAAGAAGCACATTATGCATCATAGA
TCTGCCTTCGACAAATGCTGATTGATTTGTTGCTACTATATGACTGATTGCTTTCCTTAGTCTACTACAAATCATTTCCAATATGATCTTATGTATGACA
TAACAACATGAAATTTGTCGAAACTGGTTGGCAAACTCAAGACTTTCTATCTTTGGAACAAGAGCAATACTAGTAGAATTGAGTTGACTTAGAATCTTGC
TGGATTGGAAAAAATCTAACACTGCGCTAGTTACATCTTGCCCTACAATGCCCCATGCAGCAATGTAAAAACAACTTCCAAAACCATCCGGAACTGGGGC
TCCAAATTCTGTTAATCTTGAATACTATCTTCT
>LE_HBa0122H07_SP6_57564 (trimmed for quality and cloning vector)
TGTAAAGTGTGCTAAGGCCTCCATAACTCTATTCACAGACTCCATATTACCTTTGCAGAAAAAACATCAAATCATCCGCAAAAATAATATTAGTAAGCTT
CAATTTCTTACACATAGGGTGAAATCTAAATTTTGGTAAATCCTCCATACTGTTAAGAATTCTAGACAAATATTCCATCACTAGCACAAATAGTAATGGT
GATACAGGGTCCCCTTAACTAAGCCATGGTTTTCACCATTCACTTTGACTGAAAATTCTAGAGTTGTTACACAAAGCATAATCCATTTGACAAACTCCCC
AGGAAACCCAAACCCAAGCAACATCTCCTTTAGGAACTCCCAACTAACCATGTCGTAAGATTTCCTCAAATCTATTTTCATTAGGCATCTTGGAGTAGCA
TTTTTCCTATTATTGTGTCTCAATAGGTCATGGAAAAGAAGCACATTATGCATCATAGATCTGCCTTCGACAAATGCTGATTGATTTGTTGCTACTATAT
GACTGATTGCTTTCCTTAGTCTACTACAAATCATTTCCAATATGATCTTATGTATGACATAACAACATGAAATTTGTCGAAACTGGTTGGCAAACTCAAG
ACTTTCTATCTTTGGAACAAGAGCAATACTAGTAGAATTGAGTTGACTTAGAATCTTGCTGGATTGGAAAAAATCT

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.948288
Expected error %
0.124214
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAG50806.1| Score 135 E Value 7e-41 Identity 40.40% Align. Length 643bp (95.12%) Frame 3
unknown protein [Arabidopsis thaliana] pir||D86384 unknown protein [imported] - Arabidopsis thaliana
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAB78261.1| Score 134 E Value 3e-40 Identity 43.80% Align. Length 589bp (87.13%) Frame 3
putative reverse transcriptase [Arabidopsis thaliana] emb|CAB45965.1| putative reverse transcriptase [Arabidopsis thaliana] pir||T48128 probable reverse transcriptase - Arabidopsis thaliana
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0122H07
Clone
Clone name
hba-122h7
LE_HBa0122H07
P122H07
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found