Notice: We have moved solgenomics to a new server and hosting system which caused some instability over the last few days. We apologize for any inconvenience.

Clone Read LE_HBa0101N23_SP6_57116

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0101N23_SP6_57116
Primer
SP6
ID from Seq. Facility
LE_HBa_101_N23-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
564 trimmed for vector and quality, 745 raw
Genbank Accession
DU080855
Sequence
>LE_HBa0101N23_SP6_57116 (raw untrimmed)
GATTTCTGGTATCGGGCCGGTATATCTCGGCGTCTCTGCTTCATAGATAATGCAAATAATAAAAAGTTGATCAACCGATAGGTGAGAGGGACAAAAAGCA
CACGTTTCTGTGAAACATCCTTCCTGTACCAGTAAGAATTTTAATACTTGGCAAATCTTTTATGATGTCTGTTTAATGGCTTTTGCTAGTGTTCAAGTAG
TCATTGATTTAGCAGTCGCAGGTGTTGATGCCAACATAATTGTCCTCTCAGTGACTTATCTTTTGAATACCAGGTCTGAGACATCTAGGGTCTTCTAACA
TTTTGGATTCTCATCTGCAATCAATTCTCGAGGATGTTAAATTAGTCTACCTTTTAGAAAGAGAAGGTGGCTGGGATGCCAACCAGAACTGGGAGGACAT
CCTATCTCTTGGAGAACAACAACGATTAGGAATGGTGAGCTCAAAAAGTGCTGATTATTTTCTGACCCAAAAACTTTGTTTAGAAATATATTTCATATTT
TGTTTCTTTGCTGCTAACTGATTTGGCATTTCTACAAGGCACGCTTATTTTTTCACAAGCCACGGTTTGGAATCCTTGACGAATGTACAAAGTAACTAAA
CAAGCTCAGATCTCAGTGGTCTCCAATTAGCATATTGGAAACTTTTCTATGACCTCGTATTCCTGACCTTGCTATTCCCTCTTTCTATCTGCATTGCTAC
TATTGTTGATGTTTGAAAAAACATCTTGTAAATTGCTTGCTAAGG
>LE_HBa0101N23_SP6_57116 (trimmed for quality and cloning vector)
CGTCTCTGCTTCATAGATAATGCAAATAATAAAAAGTTGATCAACCGATAGGTGAGAGGGACAAAAAGCACACGTTTCTGTGAAACATCCTTCCTGTACC
AGTAAGAATTTTAATACTTGGCAAATCTTTTATGATGTCTGTTTAATGGCTTTTGCTAGTGTTCAAGTAGTCATTGATTTAGCAGTCGCAGGTGTTGATG
CCAACATAATTGTCCTCTCAGTGACTTATCTTTTGAATACCAGGTCTGAGACATCTAGGGTCTTCTAACATTTTGGATTCTCATCTGCAATCAATTCTCG
AGGATGTTAAATTAGTCTACCTTTTAGAAAGAGAAGGTGGCTGGGATGCCAACCAGAACTGGGAGGACATCCTATCTCTTGGAGAACAACAACGATTAGG
AATGGTGAGCTCAAAAAGTGCTGATTATTTTCTGACCCAAAAACTTTGTTTAGAAATATATTTCATATTTTGTTTCTTTGCTGCTAACTGATTTGGCATT
TCTACAAGGCACGCTTATTTTTTCACAAGCCACGGTTTGGAATCCTTGACGAATGTACAAAGTA

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.96672
Expected error %
0.310512
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At4g39850.1 Score 79 E Value 5e-21 Identity 79.20% Align. Length 298bp (52.84%) Frame 1
68417.m05646 peroxisomal ABC transporter (PXA1) identical to peroxisomal ABC transporter PXA1 GI:15320529 from [Arabidopsis thaliana]; contains Pfam profile PF00005: ABC transporter;
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAB80648.1| Score 82 E Value 6e-15 Identity 26.70% Align. Length 149bp (26.42%) Frame 1
putative protein [Arabidopsis thaliana] emb|CAB38898.1| putative protein [Arabidopsis thaliana] pir||T06091 hypothetical protein T5J17.20 - Arabidopsis thaliana
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
dbj|BAB84551.1| Score 79 E Value 2e-19 Identity 79.20% Align. Length 298bp (52.84%) Frame 1
peroxisomal ABC transporter [Arabidopsis thaliana] dbj|BAB84550.1| peroxisomal ABC transporter [Arabidopsis thaliana]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0101N23
Clone
Clone name
hba-101n23
LE_HBa0101N23
P101N23
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found