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Clone Read LE_HBa0101K17_SP6_56960

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0101K17_SP6_56960
Primer
SP6
ID from Seq. Facility
LE_HBa_101_K17-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
3 trimmed for vector and quality, 1243 raw
Sequence
>LE_HBa0101K17_SP6_56960 (raw untrimmed)
AATATATGATAACAACTAAATATTCTATATTGAGGCTTCTGACATTTCTGCATGGCACTTCCCGCGATCTTTCCTACGTTATGACTCCATTCCTGCGTAC
AGAGCATTGCGGTCCGTCTCCCTTGAGTATAGATCACTAGTAAATATGTACGATTGCTCCGCTACGATCAATATACAAGGGAGGTCCCTCTATCCGCATA
CATCTCCTCATGTTCCTACAATGGTTACGAACATATCCTTTTCTAGACGTTATACAGCATCATGACCTTGTTAGAGGACTAACTAGATCGTGATCACTGT
TATGAGCACACCTCTACTATCTTCAATCTCCTCTATCAGTAATAGTTAGGTGTGCTACACCTTTGGCATTGTATACTGCGAATACGACATATCTCGCTGG
TCCATCATTCTCAAGATTCACTGCATGTCTGAGATTGCGTTCACTGTATCGTTAGTCACTTCTTATACTTGGACTTTTGATACCTATATACGCGTAGTCT
GCTCTCTCTTTCCACACTCGTACCGTACTCACATGTCGTCCCGACACTCTGCGTAAATTTTGTATGACTTCCTTTCTACTTTATATAATTGATAATCTCT
GTTAGTCTCTGCCACCTGCCCACATGTACTACCAATGTGTGTGAACCGTTACCCACCAAGAACACCGATTCCTTCCGTATCTGTATATCTTGACTGTCGC
CATCGGCTACCTCGACCGCATCTACAACTCTCCAATTACCGTTATGATGAGGTTAGATATGTTAGATGCCATTCTGATATATGAACGGATAGATAGTAGC
CTACATAATCAACATTACAACTAATTCTATTCGGTTCATTCAACACTGAGCCTCCGATAATGAAACTGCTGACATCTTATCAACAGATTGAATGAAATTT
ACTTCTATTTTTGTCTTTGGGTGTTGACTGAAGACTATATCACTACATAACCCTATCAAATGCTCCATTCTTGTCTATACGTTAACCTCCTCTAAGCTAT
ATTCTATATGCCCTCTTTACACGTATTACTTTAAACCATGCATTATTCCACTTGCATATTTTATACTACATTACTACTAGTGACCCGAATGCTGATTGAT
GCTTTCTATCATGTAGTCTATCACTCTAGTATTGTTATCTCTATGTAATATGTTGTATAGAGATGCGATAACTGTGCATACTGTTGCGTTGCGCCGCTTG
ATAAAGCATCTTGCTTGAATGTTCACTTATTATCAGTAATCTA
>LE_HBa0101K17_SP6_56960 (trimmed for quality and cloning vector)
TTG

This is probably not a useful sequence.

Problems:
  • High predicted error rate
  • Low complexity
  • Short cloning insert
 Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
3.73081
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0101K17
Clone
Clone name
hba-101k17
LE_HBa0101K17
P101K17
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found