Clone Read LE_HBa0074M01_SP6_55488

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0074M01_SP6_55488
Primer
SP6
ID from Seq. Facility
LE_HBa_074_M01-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
512 trimmed for vector and quality, 868 raw
Genbank Accession
DU080117
Sequence
>LE_HBa0074M01_SP6_55488 (raw untrimmed)
GGGGCAGATTTTTTCGAAGGTTATTGTGACATTCGAAGTTCTTAAGCGCGTGGGGGAGGTGGCCTATGAATTGGCCCCTTTTCCAGAGCTGTCAGGAGTG
AACCCGGTATTTCATGTGTCAATGCTTAAGAAATACCACGGTGATGAAAATTACATTATTCGTTGGAATTCAGTTCTTCTTGATGAGAATCTGTCTTATG
AGGAGGAGCCTGTTTCTATTCTAGATAGGGAGGTCCGCAAGTTGAGATCAAAGGAGATTGCATCTATCAAGGTTCAGTGGAAGAATCAGTCAGTCGAAGA
GTCCACTTGGGAGAGTAAGGCTGATATGCGTAAAAGATATCCACACATTTTTATCAATTCAGGTACCTTTCCTTACTCTCACTTTCTGTTGATCGTTCGA
GGACGAACGATGGGTAATTTGGTATCTATTGTAACGACCCTTTGGGTCGTTTCGTGTGTTAAAACCTTATGTTTCATAAAATACTTTTTGATATATTCTA
AGTGGATATTTTGGACTATTAGTAATTATAATTATAAAATTAGTGGGGTAGTTTTAATGATGAATATACTTTGTGGTTAAAGAAGATAGCATAAAAATTA
ATAGTAGCTTGTCCCTACCGTTTTTAGGATTAGCCATTTAGGTTAATATTTTCTTGCATGATACCACGAAGCTGTCAAGACCCTTGTCTTCCTTATGCGT
CCGTGCCTTGGATATTATCTCATATATAGAGGTTACAACTCCCGTCCGGTCGCGATTTTATTTTATAATCTTGATTCATTGTTTCAATGGCACTCAATAC
TGGCTAAAACAATTAAAGTGTCACGGAAAGTGACAAAGGTGAAGCTTTCCAATAGGAGCGGGGGGCGT
>LE_HBa0074M01_SP6_55488 (trimmed for quality and cloning vector)
AGTTCTTAAGCGCGTGGGGGAGGTGGCCTATGAATTGGCCCCTTTTCCAGAGCTGTCAGGAGTGAACCCGGTATTTCATGTGTCAATGCTTAAGAAATAC
CACGGTGATGAAAATTACATTATTCGTTGGAATTCAGTTCTTCTTGATGAGAATCTGTCTTATGAGGAGGAGCCTGTTTCTATTCTAGATAGGGAGGTCC
GCAAGTTGAGATCAAAGGAGATTGCATCTATCAAGGTTCAGTGGAAGAATCAGTCAGTCGAAGAGTCCACTTGGGAGAGTAAGGCTGATATGCGTAAAAG
ATATCCACACATTTTTATCAATTCAGGTACCTTTCCTTACTCTCACTTTCTGTTGATCGTTCGAGGACGAACGATGGGTAATTTGGTATCTATTGTAACG
ACCCTTTGGGTCGTTTCGTGTGTTAAAACCTTATGTTTCATAAAATACTTTTTGATATATTCTAAGTGGATATTTTGGACTATTAGTAATTATAATTATA
AAATTAGTGGGG

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.960596
Expected error %
0.262677
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38724.1| Score 137 E Value 2e-31 Identity 19.60% Align. Length 326bp (63.67%) Frame 3
putative retrotransposon protein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38792.1| Score 132 E Value 4e-30 Identity 18.30% Align. Length 326bp (63.67%) Frame 3
putative gag-pol polyprotein [Solanum demissum] gb|AAT38791.1| putative gag-pol polyprotein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0074M01
Clone
Clone name
hba-74m1
LE_HBa0074M01
P074M01
Clone type
BAC
Contamination
none
Estimated length
46,995
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found