Clone Read LE_HBa0074J07_SP6_55356

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0074J07_SP6_55356
Primer
SP6
ID from Seq. Facility
LE_HBa_074_J07-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
757 trimmed for vector and quality, 943 raw
Genbank Accession
DU080000
Sequence
>LE_HBa0074J07_SP6_55356 (raw untrimmed)
CCAGCTTATTTGTTGACCCCAAGCTAAAAAGTCCTATTTGCAGAGGCTGAAAAGGATTGCGTTGATTTTCTGTTTCCATTCTTTCATTGCCAGTGAGCAC
AGTTATCAGGCTTCTCAAGACCAAAGGATTGAATTATGGGTGCTTGCCTAACCTCTACGATAGCGTAGAGAATCTAAACGAAACATATATTCAGTCTAAT
CAAGACAAGAACATCCTTTTAAAACCAAAATCTCCAGTTGGGATATTTTCTGTTCCTTTTCTAGCACTTAGTGACGTTCCTGCACAAAAGATATCTTATG
GATGTTCTCGTTATGCATGTGGTTCCAACAGTTATAGTATTTATTATGTTACGGATGTCCCTAATTCTCAATGTCCAAATTGTGAGTATCCTATGTCAAG
AAAGTTGACGTATCTTGTTCCACAAGGAGTGAATAAACCTGTGGGTACTACAGGCACTGGTTTTGTAAAGGAGGCAGTGAAATACATGGTGATGGATGAT
TTGGTCGTTAAGCCTATCTCCGTTGTATCAAGCATCACCGCTCTAAACAGTTACTTTAATGTCAAGGATGTTTCTTCCTTGCAGGAGAAAGTTGTAAATT
TAGGAATGAAAGAGGTATTCAATTCAATTGTATGTATACTCTTTTATTCATTTGGTACTACGAATTCTAGTTGATTACTCTTATCATTCTTGCAGGCGCT
GAAGTTGCTCAAGGCATCGTTTGAATCAAAAACAGTTCTGACTAGTGTTTTCATGACCAGTGCAAAGCGAAAAAGAGCTTTGTAGAGCTTTCAGAGAATA
GGATATTAGACATGAGGGAATGCGATGTTTCAGTTATTGTTATTATCAATTTTACTAGTGGTGGGTTACTTTTGTTTTTTAGGTCATTGTATATGGCTAA
AAAATTCCTGTTCAAAGTTTTCCAGAGTAATTCCTTAAAGAAA
>LE_HBa0074J07_SP6_55356 (trimmed for quality and cloning vector)
AGTCCTATTTGCAGAGGCTGAAAAGGATTGCGTTGATTTTCTGTTTCCATTCTTTCATTGCCAGTGAGCACAGTTATCAGGCTTCTCAAGACCAAAGGAT
TGAATTATGGGTGCTTGCCTAACCTCTACGATAGCGTAGAGAATCTAAACGAAACATATATTCAGTCTAATCAAGACAAGAACATCCTTTTAAAACCAAA
ATCTCCAGTTGGGATATTTTCTGTTCCTTTTCTAGCACTTAGTGACGTTCCTGCACAAAAGATATCTTATGGATGTTCTCGTTATGCATGTGGTTCCAAC
AGTTATAGTATTTATTATGTTACGGATGTCCCTAATTCTCAATGTCCAAATTGTGAGTATCCTATGTCAAGAAAGTTGACGTATCTTGTTCCACAAGGAG
TGAATAAACCTGTGGGTACTACAGGCACTGGTTTTGTAAAGGAGGCAGTGAAATACATGGTGATGGATGATTTGGTCGTTAAGCCTATCTCCGTTGTATC
AAGCATCACCGCTCTAAACAGTTACTTTAATGTCAAGGATGTTTCTTCCTTGCAGGAGAAAGTTGTAAATTTAGGAATGAAAGAGGTATTCAATTCAATT
GTATGTATACTCTTTTATTCATTTGGTACTACGAATTCTAGTTGATTACTCTTATCATTCTTGCAGGCGCTGAAGTTGCTCAAGGCATCGTTTGAATCAA
AAACAGTTCTGACTAGTGTTTTCATGACCAGTGCAAAGCGAAAAAGAGCTTTGTAGA

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.968428
Expected error %
0.15666
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|NP_909300.1| Score 124 E Value 9e-30 Identity 44.10% Align. Length 592bp (78.20%) Frame 3
P0030H07.21 [Oryza sativa (japonica cultivar-group)]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|XP_550180.1| Score 120 E Value 1e-28 Identity 43.70% Align. Length 583bp (77.01%) Frame 3
hypothetical protein [Oryza sativa (japonica cultivar-group)] dbj|BAD61346.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0074J07
Clone
Clone name
hba-74j7
LE_HBa0074J07
C03HBa0074J07
P074J07
Clone type
BAC
Contamination
none
Estimated length
81,003
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found