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Clone Read LE_HBa0074H11_SP6_55268

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0074H11_SP6_55268
Primer
SP6
ID from Seq. Facility
LE_HBa_074_H11-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
704 trimmed for vector and quality, 963 raw
Genbank Accession
DU079923
Sequence
>LE_HBa0074H11_SP6_55268 (raw untrimmed)
CCCGGGGTTTTTTTTCATGGTATTAGTCTTTTGGCTATTGAGCTTATGCACTTCTTTCTATTTCCAGCAGTTTTGTGTCACTTGATGCTAATTCTAGGAA
ACATGGCTAATGTTTTGTGCATAAATCTGAAATCAATCAAACAATTGTGACTTCCCTAATTGGTTAAACATCATAGTGAGCATAGGAAAGAGGTTCAAAG
AGATTTTTTGGAGAAGTGAGAATTATATTACAATCAATATTGTCATGATTTACATTTAAGCGCAAACAAAATCAGAACAAAGATTAGAGACATCTCAAAG
TAGAGAACAGTTGCTTCATCCCCTTTTTTGGCACTTCCGCCAGATTTTGTACAACAGGTGTTTCAACATCAAGAAAGCCAGCAACAAACTACACTGCAAC
TTCTCCCTGTAGCATTTGCATTGTTTTGAGTATGAATAAAAGAGAACCTCTTCTAAATTACTCTGATATTTCATCATCGGGTTGTATTACAGTTAGCAAG
GAATATTTGACCCTCACAGAGATCCTTCCTTTCTCAACCATAAGCCTTGCACCTGAAACAACCCAATAACCAGGAGGTTCCTGTGGTCCTCGAGTCATCT
CAGTAGTATCGACAAATTTCAAGAGCTTAGGGGCTTGCACAGGAACTGGAGGACCACCAGGGTAAATGGCAGAATTTATGTTTCACATCATCTGGCCGAG
GAGGTGGCTTCTGAACTGATGTAAAGTGCTGGCTAATGAGAGTTGATATCAGGCCAGATTTGCGAGCCAACCCAGGGGAAACATCCCACTCAGCGTGCTT
TACCATAGTACCTCCCATGACAGTCGAGAAACGGAGTCTCAGAAAGAGGACTTTTTTTAACCCCAAAGTCCCCAAATTCCATTGGGCTCCAGTAACTATG
TTAAGGGCTTCATCAGAATCAACAGGTGGGGGGCAAAGGGAGAAAAGTTCTTCCCTTGAAATT
>LE_HBa0074H11_SP6_55268 (trimmed for quality and cloning vector)
ATTGAGCTTATGCACTTCTTTCTATTTCCAGCAGTTTTGTGTCACTTGATGCTAATTCTAGGAAACATGGCTAATGTTTTGTGCATAAATCTGAAATCAA
TCAAACAATTGTGACTTCCCTAATTGGTTAAACATCATAGTGAGCATAGGAAAGAGGTTCAAAGAGATTTTTTGGAGAAGTGAGAATTATATTACAATCA
ATATTGTCATGATTTACATTTAAGCGCAAACAAAATCAGAACAAAGATTAGAGACATCTCAAAGTAGAGAACAGTTGCTTCATCCCCTTTTTTGGCACTT
CCGCCAGATTTTGTACAACAGGTGTTTCAACATCAAGAAAGCCAGCAACAAACTACACTGCAACTTCTCCCTGTAGCATTTGCATTGTTTTGAGTATGAA
TAAAAGAGAACCTCTTCTAAATTACTCTGATATTTCATCATCGGGTTGTATTACAGTTAGCAAGGAATATTTGACCCTCACAGAGATCCTTCCTTTCTCA
ACCATAAGCCTTGCACCTGAAACAACCCAATAACCAGGAGGTTCCTGTGGTCCTCGAGTCATCTCAGTAGTATCGACAAATTTCAAGAGCTTAGGGGCTT
GCACAGGAACTGGAGGACCACCAGGGTAAATGGCAGAATTTATGTTTCACATCATCTGGCCGAGGAGGTGGCTTCTGAACTGATGTAAAGTGCTGGCTAA
TGAG

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.963405
Expected error %
0.0536268
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At4g24290.2 Score 126 E Value 3e-34 Identity 81.10% Align. Length 279bp (39.63%) Frame 3
68417.m03488 expressed protein
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At1g28380.1 Score 94 E Value 6e-20 Identity 21.70% Align. Length 206bp (29.26%) Frame 3
68414.m03487 expressed protein
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAB79339.1| Score 126 E Value 1e-32 Identity 81.10% Align. Length 279bp (39.63%) Frame 3
putative protein [Arabidopsis thaliana] emb|CAB45064.1| putative protein [Arabidopsis thaliana] ref|NP_849433.1| expressed protein [Arabidopsis thaliana] pir||T09892 hypothetical protein T22A6.120 - Arabidopsis thaliana
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|NP_914227.1| Score 125 E Value 8e-28 Identity 26.50% Align. Length 218bp (30.97%) Frame 3
P0401G10.6 [Oryza sativa (japonica cultivar-group)]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0074H11
Clone
Clone name
hba-74h11
LE_HBa0074H11
P074H11
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found