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Clone Read LE_HBa0074E04_SP6_55110

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0074E04_SP6_55110
Primer
SP6
ID from Seq. Facility
LE_HBa_074_E04-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
743 trimmed for vector and quality, 917 raw
Genbank Accession
DU079770
Sequence
>LE_HBa0074E04_SP6_55110 (raw untrimmed)
CCCGGCTTCCGTTTCAGCTTCACAGAAGATATGAGCTTGTCATGTAGATAGATCGTAGAGTCCTATTTCAATGACTATTCCAGTCACGTGTTGGAGTGCC
TCGTGTAAACTGATGTGTGGAGGAACCCTAATAGTTGAAATGAGAAGTAATTTTAAAATTTGATTGTGCTATTTATAGGAATAGAATGTGAGGACTTCAG
CCCGTAACTAGTCTATACACAAAACAAGGTAAACAGACATGCAAAGGTGAGCAAATGATAATACACATCTCCTGATCGTACATGCATGCAAGTTTGTTGA
TAGAAAGACTCGGATGTTCTTTTTATGCTTTGGGATAAATCTTGCTTAGAGCAACGTATATCTTTTTTCATTCTTTTTGCAATGCTTATATAATGATTAG
GCTCTTAGAAAAGCATTCAACTAAGTTAATTGTTTTTAAAAGGCATTCATAACTAATTATGAATTTGAAACTCTGGTGGTACTTTATCTTTGATACTGAC
AATTTGTTTCCGAATCTTTGCTCTTTCATTTAGTTACTGTGCAACTCTATTCTCCAAAACGACCAGTAGTGGACATTGCAGAAGTATTTTTGTGGCTGAT
GGCTGTTGGTACAATCTTGTGTGGTTCTTATTGGTCTGCTTGGAGTGCTAGAGAAGCAGCTATAGAGCAGGACAAGCTGTTGAAGGTTGTCCCTCCTTAA
TTTAGTAGGAATATTTGCTAGAGTATGCTGAGATACTTGCGGTTCAGTTTTGCATTGATTTTTCTATTTGCCTCTTCTTGTAGGATGCTTCAGAGGAAGA
ACTTCCAAAATTTGGAACTGGTGATTCAAGCACTGTGATGGATATAAACATGATATCAGCAGTCTTAATTTGTTTGTTGTGCCTCTTGCTTCCTGTTTGT
TTTGTACAAGTTAAGAA
>LE_HBa0074E04_SP6_55110 (trimmed for quality and cloning vector)
GAAGATATGAGCTTGTCATGTAGATAGATCGTAGAGTCCTATTTCAATGACTATTCCAGTCACGTGTTGGAGTGCCTCGTGTAAACTGATGTGTGGAGGA
ACCCTAATAGTTGAAATGAGAAGTAATTTTAAAATTTGATTGTGCTATTTATAGGAATAGAATGTGAGGACTTCAGCCCGTAACTAGTCTATACACAAAA
CAAGGTAAACAGACATGCAAAGGTGAGCAAATGATAATACACATCTCCTGATCGTACATGCATGCAAGTTTGTTGATAGAAAGACTCGGATGTTCTTTTT
ATGCTTTGGGATAAATCTTGCTTAGAGCAACGTATATCTTTTTTCATTCTTTTTGCAATGCTTATATAATGATTAGGCTCTTAGAAAAGCATTCAACTAA
GTTAATTGTTTTTAAAAGGCATTCATAACTAATTATGAATTTGAAACTCTGGTGGTACTTTATCTTTGATACTGACAATTTGTTTCCGAATCTTTGCTCT
TTCATTTAGTTACTGTGCAACTCTATTCTCCAAAACGACCAGTAGTGGACATTGCAGAAGTATTTTTGTGGCTGATGGCTGTTGGTACAATCTTGTGTGG
TTCTTATTGGTCTGCTTGGAGTGCTAGAGAAGCAGCTATAGAGCAGGACAAGCTGTTGAAGGTTGTCCCTCCTTAATTTAGTAGGAATATTTGCTAGAGT
ATGCTGAGATACTTGCGGTTCAGTTTTGCATTGATTTTTCTAT

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.957594
Expected error %
0.13088
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At1g01650.1 Score 97 E Value 7e-21 Identity 28.20% Align. Length 155bp (20.86%) Frame 3
68414.m00083 protease-associated (PA) domain-containing protein contains protease associated (PA) domain, Pfam:PF02225
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At1g63690.2 Score 96 E Value 2e-20 Identity 28.10% Align. Length 152bp (20.46%) Frame 3
68414.m07208 protease-associated (PA) domain-containing protein contains protease associated (PA) domain, Pfam:PF02225
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAF78405.1| Score 100 E Value 5e-20 Identity 27.80% Align. Length 161bp (21.67%) Frame 3
ESTs gb|AA586244 and gb|T21200 come from this gene. [Arabidopsis thaliana] pir||D86147 T1N6.3 protein - Arabidopsis thaliana
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|NP_171671.1| Score 97 E Value 3e-19 Identity 28.20% Align. Length 155bp (20.86%) Frame 3
protease-associated (PA) domain-containing protein [Arabidopsis thaliana]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0074E04
Clone
Clone name
hba-74e4
LE_HBa0074E04
C08HBa0074E04
P074E04
Clone type
BAC
Contamination
none
Estimated length
90,849
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found