Clone Read LE_HBa0062H18_SP6_54514

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0062H18_SP6_54514
Primer
SP6
ID from Seq. Facility
LE_HBa_062_H18-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
18 trimmed for vector and quality, 765 raw
Sequence
>LE_HBa0062H18_SP6_54514 (raw untrimmed)
GGGGGGGGCCAGCTTCGACACGATGTGTACAGATCTTACACCGTGCATACCCTCTCGGGAAATATCTATACCGATGAAGCTATTAGGGGCCANANTGNTG
NAAAAGNGGGNAANTAAANACCTTTTGGGGTTGTTTTGAGATTGTGGATGGATATNAATGNTNNTTAAATTATGTAATATTGATTAATAAGTTTTTTTTG
TTATATTGTATGTAAAGAATTTAATAATTTTGTAAAGGTAATTTTGAANAAATATTGTGTGTTTTTAAATATTGTGATANATGTTTAATATNTTTNTGGT
ANTGGAATAAGAATTTNTTGAGTAATTGTTGTATGTTTAAATTATAGTGATAGTAATATTATTTTGTTGATAATATTAAGAAATGTGAGAGAGTATTATA
TAAGTATTTTATGATTTTTTTATTTTTTGTAATTTGAATTTTTTTATTAAATTTAATATATTTATATTATAGTATTTTTTTATTTATAATATATTTTTTT
TTTTAGATAATTTTAAATTTTTTTTTGTGATGTGATATTTATGATTTTTATTAAAATAGTTTTTTAATATATAAAATATTAATTTGGTTTTTTATTAAAA
ATTATTATTTTTTTTTTTTTTGTTAATTTTGATTTTTTNTATGTTTTAATTTTTTTATATTTGTTTATATATATTATATTTTTAATATTATATTTTAAAA
AATTAATATTTTAATTTTTAATATATAATTTTTATGGTTAATTATTAAATATTTTTATTATTAAT
>LE_HBa0062H18_SP6_54514 (trimmed for quality and cloning vector)
AATTGTTGTATGTTTAAA

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
 Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.799369
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0062H18
Clone
Clone name
hba-62h18
LE_HBa0062H18
C12HBa0062H18
P062H18
Clone type
BAC
Contamination
none
Estimated length
123,338
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found