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Clone Read LE_HBa0003H14_T7_53739

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0003H14_T7_53739
Primer
T7
ID from Seq. Facility
LE_HBa_003_H14-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
507 trimmed for vector and quality, 832 raw
Genbank Accession
DU079152
Sequence
>LE_HBa0003H14_T7_53739 (raw untrimmed)
CCTGGGTCCCGGGGGGTCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTGTACACCATCTTCTTGAAAGTTGCAGTTGGTAGAGACTTGGTGAATAGATC
AGCCATATTGTCACTTGAACGAAACTGTTGAACATTTATATCACCATTCTTTTGAAGTTTATGTGTATAGAAAAGCTTTGGTGAAATATGCTTTGTTCTC
TCCCCTTTTATGAATCCTCCCTTAAGTTGTGCTATGCATGCTGCATTATCTTCATATAAAGTGGTGGGTACTTTATCACATTCCAAACCACATTTCTCTC
GAATGAGATGTATCATAGACCTTAACCACACACATTCTCTACTTGCTTCATGAATAGCTATTATTTCAGCATGATTAGATGAAGTGGCTACGATGGACTG
CTTTGTAGATCTCCAAGATATGGCAGTCCCCGCACATATAAACACATAGCCTGTTTGGGATCGAGCTTTGCGTGGATCAGATATATATCCTGCATCATCA
TAACCAACAATGATTTGGGCTACAATTAACAGAATAAAATAAATCTTATATCACTTGCCCCTTTAACATTACACAAAATTGTGTTTGATCCCTTCTCAAA
GTCTCCTAATAGGAGTAGAACTACACTTATCTATCTTGTTTATATCATGTACTATACAATCCTCTGTAGTTTTAGTAAGATTCAGTATTTGCTGCATTTC
CTCTCATATATGGTACTTTTTAATTCTATATTTTTTTTTTTTTTGTTTTTGAATTTAAAATTTTATTTCTTTATTCTCGTCCAATATATTATTATTCACT
ATTGATATATTCGTTTTTGATATGTTTCAGAA
>LE_HBa0003H14_T7_53739 (trimmed for quality and cloning vector)
AGCTTGTACACCATCTTCTTGAAAGTTGCAGTTGGTAGAGACTTGGTGAATAGATCAGCCATATTGTCACTTGAACGAAACTGTTGAACATTTATATCAC
CATTCTTTTGAAGTTTATGTGTATAGAAAAGCTTTGGTGAAATATGCTTTGTTCTCTCCCCTTTTATGAATCCTCCCTTAAGTTGTGCTATGCATGCTGC
ATTATCTTCATATAAAGTGGTGGGTACTTTATCACATTCCAAACCACATTTCTCTCGAATGAGATGTATCATAGACCTTAACCACACACATTCTCTACTT
GCTTCATGAATAGCTATTATTTCAGCATGATTAGATGAAGTGGCTACGATGGACTGCTTTGTAGATCTCCAAGATATGGCAGTCCCCGCACATATAAACA
CATAGCCTGTTTGGGATCGAGCTTTGCGTGGATCAGATATATATCCTGCATCATCATAACCAACAATGATTTGGGCTACAATTAACAGAATAAAATAAAT
CTTATAT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.962595
Expected error %
0.766594
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAS79613.1| Score 224 E Value 1e-57 Identity 22.60% Align. Length 464bp (91.52%) Frame 1
putative copia-like polyprotein [Ipomoea trifida]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
dbj|BAA97087.1| Score 219 E Value 2e-56 Identity 22.90% Align. Length 458bp (90.34%) Frame 1
copia-type pol polyprotein-like [Arabidopsis thaliana]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0003H14
Clone
Clone name
hba-3h14
LE_HBa0003H14
C02HBa0003H14
P003H14
Clone type
BAC
Contamination
none
Estimated length
99,276
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found