Clone Read LE_HBa0003G19_SP6_53700

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0003G19_SP6_53700
Primer
SP6
ID from Seq. Facility
LE_HBa_003_G19-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
559 trimmed for vector and quality, 820 raw
Genbank Accession
DU079119
Sequence
>LE_HBa0003G19_SP6_53700 (raw untrimmed)
ATTTTTGCCTTTGACATCATATCTAATCTCATCTACCAATTTGCTTCCTATTCCTTTGCCTACCTTTAAGCACCGTTCCTTTCAGACATTTTTTTCCCCT
TTTTCATCCCTTTTCCACAAACTAGTATTTCAAGAGTTTTCTAGGATAAATCATGAGAAAGAGATACATGCGACTGTTGAAGTGATCTCTTATTTTCTGG
AATTTTCTTATTGAAGTATGATGTGGGGTGTTATTTTCTCTTTGGATGAAATCACTTGAACATTCTTTTTGATCAGTTAAGTCACTTGAAAGTTTCTTGC
AGTTAGTCTGTTCCGTCGATATCAACTTGTGTTTGTCTTGGTGTAATGTTCAGGTGCTGAGGGCCATGAAAGAGTCAGATTCTGTTAGACCTGCAATTTT
TGCCATGTCAAATCCTACAAACAATGGTTTGTCTTCTCATCCATCTTTTGCTTCCTCAATCGGCTGTTTGTCTTGATCTTGCATTTAAATTGTATATTCT
GTTCAACAGCTGAATGCTGTCCTGTTGATGCTTTCAAGCTTGCTGGAGAAGATATTGTTTTTGCTAGTGGGAGTCCCTTTGCATATGTTGATCTAGGTAG
TTTCTGGTTCCTTGAATGCATTTTTTTCCTTTGTATACTTTATGCACTTGTTGTTGTCTAGGAGCAACTCCTTCTTTTTTTGTCATCTCCCCCTTCCCAT
GTTAAACCTTGTTTTGTGCTTACTTCGTTGACGGATTACCTTATAGATTCTCTTTTTCTTAATTTGTTTCTTCCGGTGATTTGTTAATGATTGGCCTAGT
TATATTCTTGCCTTCTTCCT
>LE_HBa0003G19_SP6_53700 (trimmed for quality and cloning vector)
ATCTAATCTCATCTACCAATTTGCTTCCTATTCCTTTGCCTACCTTTAAGCACCGTTCCTTTCAGACATTTTTTTCCCCTTTTTCATCCCTTTTCCACAA
ACTAGTATTTCAAGAGTTTTCTAGGATAAATCATGAGAAAGAGATACATGCGACTGTTGAAGTGATCTCTTATTTTCTGGAATTTTCTTATTGAAGTATG
ATGTGGGGTGTTATTTTCTCTTTGGATGAAATCACTTGAACATTCTTTTTGATCAGTTAAGTCACTTGAAAGTTTCTTGCAGTTAGTCTGTTCCGTCGAT
ATCAACTTGTGTTTGTCTTGGTGTAATGTTCAGGTGCTGAGGGCCATGAAAGAGTCAGATTCTGTTAGACCTGCAATTTTTGCCATGTCAAATCCTACAA
ACAATGGTTTGTCTTCTCATCCATCTTTTGCTTCCTCAATCGGCTGTTTGTCTTGATCTTGCATTTAAATTGTATATTCTGTTCAACAGCTGAATGCTGT
CCTGTTGATGCTTTCAAGCTTGCTGGAGAAGATATTGTTTTTGCTAGTGGGAGTCCCTT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.939757
Expected error %
0.19556
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAA80547.1| Score 52 E Value 3e-15 Identity 92.00% Align. Length 226bp (40.43%) Frame 2
precursor of the 59kDa subunit of the mitochondrial NAD+-dependent malic enzyme [Solanum tuberosum] sp|P37225|MAON_SOLTU NAD-dependent malic enzyme 59 kDa isoform, mitochondrial precursor (NAD-ME) pir||A53318 malate dehydrogenase (decarboxylating) (EC 1.1.1.39) 59K chain precursor, mitochondrial - potato
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0003G19
Clone
Clone name
hba-3g19
LE_HBa0003G19
P003G19
Clone type
BAC
Contamination
none
Estimated length
118,824
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found