Clone Read LE_HBa0003G08_SP6_53678

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0003G08_SP6_53678
Primer
SP6
ID from Seq. Facility
LE_HBa_003_G08-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
1 trimmed for vector and quality, 1265 raw
Sequence
>LE_HBa0003G08_SP6_53678 (raw untrimmed)
GCCGCGGCGCTTTACACCGCTCAGCTCGGCGGTCGCACTGTCACGCCACACACTCAATAACCAACAGCGGTATANTACTCTAGAACTCGCTGTCCATACC
GAGTGTTTGTTACCCCCCCCCCGTTAGAGCGGACCATAGCGCATGCTATACGTGCGCCACATGTCGCTGCCGAGGGTACCCCCTCTCTAGTGGGAGCGTG
GATACTTGCTGAGGAGCGGGAGTTGTTACAGAGGCGACCTACCTCCGACCACCTAGACAAGGGGTGCCAGCACACCGAATAGACCCGCTGACGTGTTGAT
AGCTATGGCGCGGAGGCGAACCATACGGACGTGCGAGACGACANGCCGCGCTACCNGGCCTGGCGGTACGNCGTGCGTATATGGTCGCTTTCTCGTGAAT
CACAAGTCCTTCATCTAAGTCTACTCCGTTCCTCTCCTATTCCACGCTGTCTGGACAGAACGCGACCTCTCCAGCTGACGCCTATATCGCCACGCTCACT
CATCAACTGTCGGCCACGGCGTCTATAACCTCGGCGCCGTGCGCTAGCAGTTCTCGGCGCCAGACTGTAGCTGATGGGTGAGATGTCAAAAGTGGCAACG
CGAGTATGCGATATGGGAGTGCTGGTGTTGCAAATGAGACGACAAAGATACGGCGTGCGTATGCGTACGGAAATACGGGGTGGCTCTGAAGGGTGTGGCA
GGAGCAGGCTTAGATCCCACTTGCGTGCAGCGCCCAACTGCTATCGCGAATATACCGAGGTGCACCCTCTCCCACGGTACTAGTAATGATCAAGGATGAG
TACTGACTCTGAGAATATGTATCTAAGGATGATGTCGAGTCGCAAAGGCATGCGCGACGCCTGCTTCGCCTATGAGCTCTCAGGTTGCCAGTCCAGATGG
CCTGCACTAAGCGTCTTCCCAGTGCTGGCGTGCCGCTCTGTGAATGTAAACGCGGCACGTATAGATGTATAGCGAAACTAATGACAGAATACGGACAAGA
CNATCACATCTCTCCATCACTACACATAACACTCGGCCGCCGTCCACCTACACCAACGAACTAGCTGTCACTCCATACTACATATTACAACCGATCAACA
CCACCATACCGTCTCATGTGTACATTCACACATATACGGTAGCTGATGGATGTGCCGCTCCGTCAGACGTAACTGACCGCTAGACTCGTCCTCACAACGA
CTGAAGTACTTCTTCACGCTCAAGTACACCGGCCCCTTCCTCNCTCCCTTACATGCCTCTACCGT
>LE_HBa0003G08_SP6_53678 (trimmed for quality and cloning vector)
G

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
  • High predicted error rate
 Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
100
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0003G08
Clone
Clone name
hba-3g8
LE_HBa0003G08
P003G08
Clone type
BAC
Contamination
none
Estimated length
130,071
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found