Clone Read LE_HBa0003A17_T7_53409

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0003A17_T7_53409
Primer
T7
ID from Seq. Facility
LE_HBa_003_A17-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
719 trimmed for vector and quality, 803 raw
Genbank Accession
DU078880
Sequence
>LE_HBa0003A17_T7_53409 (raw untrimmed)
AACTCCGTACCGGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTTACTTGTTTCCCCTGGAAGAGCCCTAGATGAATAGTTGGAAATGACCCCG
CACACATCTGAAGATAGCTGCTAGCACCTGGATGTTGGCAACTTCCTTAACTGGGAATAGCATGCTCTTACTCCAATTAACATGTAGCCCTAATACTACT
TCAAAGATCACCAGAATAACTCTCAGATGTTTTACTTGGTCATATCAGCATAACAGAAGATTGAAGAGTCATCTGTTGTAATCTCAGCACTGTTGTCTCC
CTGATTGCAGCTTTAAACCCCTTCAGAAAACACCGTTGTCCTTCACCATCTTAAACAACTGGTTCAGTCCTTCCACTGCAATAAGAAACAGGAATGGTGA
TAGAGGATCACCTTGCCTCAAACCTCTCACGGAAGGGAAAGGTCCTTCTGTACACCCATTCACCAAGATAGAAAATTTTCACAATCTTTATGTCGAAGAG
ATTCAATTAATCCATTTCTCACCAAAGGCCATGCCTTTTAGATAGAAATTTAAGAAGGAAGCTCCAATTAACATGGTCATGCACCTTCAAGCATAACATC
CAACAAAGTTGATTAATTTCTATATTCGCTGTTAAACTTCAAGCATAACATCCCACAAAGTTGACTAATTTATATATTTGTTGTCGAATTGTACTCTCAA
TTAATCAATCAAAGCCTCAGGCCCATAATAATTTGAGGTTGGCTATATTCTCTGTATCGGTTCCCACTCTATTCAAGCTACTTCATTTCATCACTCAATA
ATT
>LE_HBa0003A17_T7_53409 (trimmed for quality and cloning vector)
AGCTTTACTTGTTTCCCCTGGAAGAGCCCTAGATGAATAGTTGGAAATGACCCCGCACACATCTGAAGATAGCTGCTAGCACCTGGATGTTGGCAACTTC
CTTAACTGGGAATAGCATGCTCTTACTCCAATTAACATGTAGCCCTAATACTACTTCAAAGATCACCAGAATAACTCTCAGATGTTTTACTTGGTCATAT
CAGCATAACAGAAGATTGAAGAGTCATCTGTTGTAATCTCAGCACTGTTGTCTCCCTGATTGCAGCTTTAAACCCCTTCAGAAAACACCGTTGTCCTTCA
CCATCTTAAACAACTGGTTCAGTCCTTCCACTGCAATAAGAAACAGGAATGGTGATAGAGGATCACCTTGCCTCAAACCTCTCACGGAAGGGAAAGGTCC
TTCTGTACACCCATTCACCAAGATAGAAAATTTTCACAATCTTTATGTCGAAGAGATTCAATTAATCCATTTCTCACCAAAGGCCATGCCTTTTAGATAG
AAATTTAAGAAGGAAGCTCCAATTAACATGGTCATGCACCTTCAAGCATAACATCCAACAAAGTTGATTAATTTCTATATTCGCTGTTAAACTTCAAGCA
TAACATCCCACAAAGTTGACTAATTTATATATTTGTTGTCGAATTGTACTCTCAATTAATCAATCAAAGCCTCAGGCCCATAATAATTTGAGGTTGGCTA
TATTCTCTGTATCGGTTCC

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.962524
Expected error %
0.217718
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAP53120.1| Score 72 E Value 1e-11 Identity 11.90% Align. Length 377bp (52.43%) Frame 3
putative retroelement [Oryza sativa (japonica cultivar-group)] ref|NP_920833.1| putative retroelement [Oryza sativa (japonica cultivar-group)] gb|AAK98717.1| Putative retroelement [Oryza sativa]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAE03482.2| Score 69 E Value 4e-11 Identity 31.40% Align. Length 498bp (69.26%) Frame 3
OSJNBa0065O17.7 [Oryza sativa (japonica cultivar-group)] ref|XP_473470.1| OSJNBa0065O17.7 [Oryza sativa (japonica cultivar-group)]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0003A17
Clone
Clone name
hba-3a17
LE_HBa0003A17
P003A17
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found