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Clone Read LE_HBa0002M01_SP6_53184

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0002M01_SP6_53184
Primer
SP6
ID from Seq. Facility
LE_HBa_002_M01-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
710 trimmed for vector and quality, 777 raw
Genbank Accession
DU078683
Sequence
>LE_HBa0002M01_SP6_53184 (raw untrimmed)
ATCCGGGAACCCTTCAGTATCCATCTTTATGACACCACAACAGCCTCCTATTGGCCCACGGTTCTGCAAATAAGGAAGGCAATTCACTACCCCAACCTGA
ATTTGGCCACAAGTCACTGCCTTTGCATGGGGTGCATTTGTAATCAACATGCATAAAACCACCAAACAAGCAATCTTGACAAACATTTTCTTTCTTTAGA
AGAGAAATATAATTGAGAGAATAGTGTGAGGAGTGTTGGGTAGAAAAATTAAGTGAGTACCTTAGGGTTTTTATAGAGAGGAAATTAATTGGAACTAAAG
ATGATAAAATGGTAGGGGAATTTATTCCAGAACACCTATTGATACAACTGACAAAGCAAAATCTTATGACAGTTTCAAATAGATTAATTTCAAATTATAT
AACTTAAAAAAAATATAATTATTTGGTTTTTAATTTTTTAGATCCAAAAATCAGAAACTCAAAACAAAATTTTCATATTTAATAGGAAAAACTACATAAT
TAGCTATATTTTACTATCATATATATTATTATTATCTATATTTTTAAAATATTACGTATCTTACCACTAATTAAGTTTTTTCTACATATCTTACATTTAG
ATACATGCATTTTTGCTATTCGATAACACAAAAATAGAGAGAGAGGAGAGCAAGATTCGTATATATCTGGAGTGATTTGCATGCATATATATTGGATACA
GGGAGAGACGCGAGGGAAATGAGTGAGATTGTACATGTGAATCCAATATAACAAATTACACCTAATTTGACCCCATG
>LE_HBa0002M01_SP6_53184 (trimmed for quality and cloning vector)
ACAACAGCCTCCTATTGGCCCACGGTTCTGCAAATAAGGAAGGCAATTCACTACCCCAACCTGAATTTGGCCACAAGTCACTGCCTTTGCATGGGGTGCA
TTTGTAATCAACATGCATAAAACCACCAAACAAGCAATCTTGACAAACATTTTCTTTCTTTAGAAGAGAAATATAATTGAGAGAATAGTGTGAGGAGTGT
TGGGTAGAAAAATTAAGTGAGTACCTTAGGGTTTTTATAGAGAGGAAATTAATTGGAACTAAAGATGATAAAATGGTAGGGGAATTTATTCCAGAACACC
TATTGATACAACTGACAAAGCAAAATCTTATGACAGTTTCAAATAGATTAATTTCAAATTATATAACTTAAAAAAAATATAATTATTTGGTTTTTAATTT
TTTAGATCCAAAAATCAGAAACTCAAAACAAAATTTTCATATTTAATAGGAAAAACTACATAATTAGCTATATTTTACTATCATATATATTATTATTATC
TATATTTTTAAAATATTACGTATCTTACCACTAATTAAGTTTTTTCTACATATCTTACATTTAGATACATGCATTTTTGCTATTCGATAACACAAAAATA
GAGAGAGAGGAGAGCAAGATTCGTATATATCTGGAGTGATTTGCATGCATATATATTGGATACAGGGAGAGACGCGAGGGAAATGAGTGAGATTGTACAT
GTGAATCCAA

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.931
Expected error %
0.0982858
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAD18029.1| Score 90 E Value 6e-17 Identity 26.10% Align. Length 152bp (21.41%) Frame 2
lipid transfer protein LTP1 precursor [Capsicum annuum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAM82607.1| Score 77 E Value 3e-13 Identity 21.60% Align. Length 152bp (21.41%) Frame 2
putative non-specific lipid transfer protein StnsLTP [Solanum tuberosum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0002M01
Clone
Clone name
hba-2m1
LE_HBa0002M01
P002M01
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found