Clone Read LE_HBa0010M13_T7_5209

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0010M13_T7_5209
Primer
T7
ID from Seq. Facility
LE_HBa_010_M13-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
741 trimmed for vector and quality, 963 raw
Genbank Accession
DU024924
Sequence
>LE_HBa0010M13_T7_5209 (raw untrimmed)
CAGCCGCGGTACCCGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTCCCTCATATGCCACCGACCACCCTTTAGGGTACACTTTTGGGTCTATG
TAGTCAAGGGAGACATTATGGAGACAAAACAATTCACAAACCTCCAATAATAACCTACTAAACCTAAGAAATTTAATGTCGGTTTAGGCATATTTTTCAC
CACCTCCGTAATTCATGGATTAACCTCAACCTCCTCACTAGAGATGATATGACAAAGAAATGTCACCGAGCTCAACTTGGACTCAAATTTAGTATACAAG
GAAAAAAATTTATGTTCTTTAAGTACTTACAAAACCACCCTCAAATGGTTCATGTCATTACCCTTATTTTTTGCACATACCAAGATGTCGTCCATGAAGA
CAATGAGCAATGAAACTAAGTAATTTCGAAACACCATAATCATTTGGTACATAAATTTTGCCGGAGCATTAGTGAGATTAAATGACATTACTAATAATTC
ATAATGACCATATCAAGTATGAAGTTCCCTCTTTGGTATATCCTCACCTCTCACCCTATGTTGGTGACACCCATTCTCAAGTAAATCTTAGAAATGTAGC
TTGCCCCTTGGAATTGATCAAACAAGTCGTCAATCCGAGGGAGAGGATAATTGTTCTTAATAGTGACTTTATTGAGTTAGCGATAATGTATACACATTTT
TAAAGACCCAACCTTCTTGTTTAAAACAAAACTGGAGAACCCTATGGAGAAAACTAGGTCAATGAAGCTTTGTCTAGTAAATCTTTGAGTCGAGCCTAAA
CTCTTTCAATCGGTTGGAGCATACTGTACGAGGAATAAAATGGGATTTGTACCGATTGAAATCGAAAAAAAAAATTTCAATTCAGAGAATATGGGAGATC
ATAGAAAACTTCGGGAATCCTCACTCGGGACAAAAATTGATGATTCAAATTAATCTGATTTTC
>LE_HBa0010M13_T7_5209 (trimmed for quality and cloning vector)
AGCTTCCCTCATATGCCACCGACCACCCTTTAGGGTACACTTTTGGGTCTATGTAGTCAAGGGAGACATTATGGAGACAAAACAATTCACAAACCTCCAA
TAATAACCTACTAAACCTAAGAAATTTAATGTCGGTTTAGGCATATTTTTCACCACCTCCGTAATTCATGGATTAACCTCAACCTCCTCACTAGAGATGA
TATGACAAAGAAATGTCACCGAGCTCAACTTGGACTCAAATTTAGTATACAAGGAAAAAAATTTATGTTCTTTAAGTACTTACAAAACCACCCTCAAATG
GTTCATGTCATTACCCTTATTTTTTGCACATACCAAGATGTCGTCCATGAAGACAATGAGCAATGAAACTAAGTAATTTCGAAACACCATAATCATTTGG
TACATAAATTTTGCCGGAGCATTAGTGAGATTAAATGACATTACTAATAATTCATAATGACCATATCAAGTATGAAGTTCCCTCTTTGGTATATCCTCAC
CTCTCACCCTATGTTGGTGACACCCATTCTCAAGTAAATCTTAGAAATGTAGCTTGCCCCTTGGAATTGATCAAACAAGTCGTCAATCCGAGGGAGAGGA
TAATTGTTCTTAATAGTGACTTTATTGAGTTAGCGATAATGTATACACATTTTTAAAGACCCAACCTTCTTGTTTAAAACAAAACTGGAGAACCCTATGG
AGAAAACTAGGTCAATGAAGCTTTGTCTAGTAAATCTTTGA

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.955263
Expected error %
0.948693
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38744.1| Score 157 E Value 2e-54 Identity 50.60% Align. Length 676bp (91.23%) Frame 2
putative gag-pol polyprotein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38724.1| Score 157 E Value 5e-54 Identity 50.60% Align. Length 676bp (91.23%) Frame 2
putative retrotransposon protein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0010M13
Clone
Clone name
hba-10m13
LE_HBa0010M13
P010M13
Clone type
BAC
Contamination
none
Estimated length
73,056
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found