Clone Read LE_HBa0067H05_T7_51417

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0067H05_T7_51417
Primer
T7
ID from Seq. Facility
LE_HBa_067_H05-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
727 trimmed for vector and quality, 797 raw
Sequence
>LE_HBa0067H05_T7_51417 (raw untrimmed)
TTGGGTCCCGGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTTTCATAACCATTTTTGTTGCATCCTCAGTCCCTACCGTAGAAAAAGGACAAA
CTAGGCTTTCAATGTAGATTTCCTCCTCGTCCCAATTATAGGAGTTAATAACCTTTGAAGATCTGAGCTGGTCACCCTTTAGATTGTATATCATGAATTT
TGATCCTAACACAACCAAAATTTCACTTCCACTTGCCATGTATAAATGTATTGGTTCGAGATATCCATACACTGATAGATCCCGTAAAATATTGAGAGTA
AACATCTTTATCCAAGATTCTTTAACCCCATACTCCTTCCTAAGCCAAACATCCACCATATCAGTTTCGACAAAACCACACCAGATCAAAAGATCACTTC
CCAAGACTGCCAAGACTCCGAAGCTCAAAAGCAAACCTCTTCCTCCTTTCCAATAACAGGGTAGTTCCATCTCTCCCCATTTCCCGTCAGCCAAATCAAT
AGAAATGATGCTTCGTGTATTAGGATGAATGCTAGTAATCCAATAAATTTTCCCATTCACAAAGTTACCTGACTGCGTTAGTGGCACCATACTTGGACAA
TCATCAACCCATCTCCAAGAATCACGTTTTAGACTATATTTTTGTACCTCAATTTGAGGTGACAAGTTATCATTCCATAGAACGACTACCTTATAATCAT
CACGGAACTCATCATATCCAAAACTATACAGGCAATACCCCAAAGTAGTTTTAATTTTAGGAGTAGGCAACTTTTTTGTACTTTCTGATGGATGGAT
>LE_HBa0067H05_T7_51417 (trimmed for quality and cloning vector)
AGCTTTTCATAACCATTTTTGTTGCATCCTCAGTCCCTACCGTAGAAAAAGGACAAACTAGGCTTTCAATGTAGATTTCCTCCTCGTCCCAATTATAGGA
GTTAATAACCTTTGAAGATCTGAGCTGGTCACCCTTTAGATTGTATATCATGAATTTTGATCCTAACACAACCAAAATTTCACTTCCACTTGCCATGTAT
AAATGTATTGGTTCGAGATATCCATACACTGATAGATCCCGTAAAATATTGAGAGTAAACATCTTTATCCAAGATTCTTTAACCCCATACTCCTTCCTAA
GCCAAACATCCACCATATCAGTTTCGACAAAACCACACCAGATCAAAAGATCACTTCCCAAGACTGCCAAGACTCCGAAGCTCAAAAGCAAACCTCTTCC
TCCTTTCCAATAACAGGGTAGTTCCATCTCTCCCCATTTCCCGTCAGCCAAATCAATAGAAATGATGCTTCGTGTATTAGGATGAATGCTAGTAATCCAA
TAAATTTTCCCATTCACAAAGTTACCTGACTGCGTTAGTGGCACCATACTTGGACAATCATCAACCCATCTCCAAGAATCACGTTTTAGACTATATTTTT
GTACCTCAATTTGAGGTGACAAGTTATCATTCCATAGAACGACTACCTTATAATCATCACGGAACTCATCATATCCAAAACTATACAGGCAATACCCCAA
AGTAGTTTTAATTTTAGGAGTAGGCAA

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.955575
Expected error %
0.241909
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At4g12560.1 Score 84 E Value 8e-17 Identity 9.20% Align. Length 662bp (91.06%) Frame 3
68417.m01982 F-box family protein contains F-box domain Pfam:PF00646
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At3g23880.1 Score 84 E Value 1e-16 Identity 9.40% Align. Length 677bp (93.12%) Frame 3
68416.m03001 F-box family protein contains F-box domain Pfam:PF00646
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38720.1| Score 134 E Value 2e-30 Identity 14.20% Align. Length 677bp (93.12%) Frame 3
putative F-Box protein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAU93580.1| Score 129 E Value 8e-29 Identity 13.90% Align. Length 677bp (93.12%) Frame 3
putative F-box protein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0067H05
Clone
Clone name
hba-67h5
LE_HBa0067H05
C03HBa0067H05
P067H05
Clone type
BAC
Contamination
none
Estimated length
123,951
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found