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Clone Read LE_HBa0067C09_T7_51185

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0067C09_T7_51185
Primer
T7
ID from Seq. Facility
LE_HBa_067_C09-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
750 trimmed for vector and quality, 813 raw
Sequence
>LE_HBa0067C09_T7_51185 (raw untrimmed)
TCGGGTCCCCGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTTTTGATCATTGTAGAATCTGAAGTCTAACTTAACAATGTGGAAACTTGGAAC
ACTCCCTCCTGCTTTGATTGCATTCAAAGGTCATGTTCATCCTATTGACCCGTCGTGGCACATGCTTGGCTTGGGCTATCAGAATAATACCAATGTTGAG
AATGTGAAGAAGGCTGCTGTCATTCATTACAATGGTCAATCGAAGCCTTGGCTTGAAATAGGATTTGAGCATCTCCGGCCTTTTTGGACCAAGTATGTTA
ACAGCACCAATGATTTCATTAAGAACTGTCACATATTGGAGTAGTGTACGTGTTATGCTGCAAGGACAATACGCAGGATAGAAATTCAAATGGCATAGGC
TTTGCTGAATCCCCCCTAGGGAACTTAAAATCGAATCGAGAAGGAGATTCTGATACTTGACAGAATTGGCTGGGATATATATTCAGGTATGGGATGTGTG
CTACTTTGACTCACTTCTATGAAGAGTACCTGTGATACTAGCATGGATATGAGATTCGTTCTTCCCATTTGTAAAATAAAAATTCGTTGCCTAGCTTGTT
GATGTGACAAAAGTACACATTATATCTGCACTTTAGATGGATGTAGTATACATTTGGCTCTCACTGTTACCATCAGTGATACAAAATCGGGACATAACGA
GAAGAAAAGCTAGGATGTGGCGCTCACTTTTGGCTATACATTTGGCTCCATTAGAGGTTGAGATGATTCTTTTGGCTTCATTTCATAATTTTTTTTCCTA
GTCAGTTTGGATC
>LE_HBa0067C09_T7_51185 (trimmed for quality and cloning vector)
AGCTTTTTGATCATTGTAGAATCTGAAGTCTAACTTAACAATGTGGAAACTTGGAACACTCCCTCCTGCTTTGATTGCATTCAAAGGTCATGTTCATCCT
ATTGACCCGTCGTGGCACATGCTTGGCTTGGGCTATCAGAATAATACCAATGTTGAGAATGTGAAGAAGGCTGCTGTCATTCATTACAATGGTCAATCGA
AGCCTTGGCTTGAAATAGGATTTGAGCATCTCCGGCCTTTTTGGACCAAGTATGTTAACAGCACCAATGATTTCATTAAGAACTGTCACATATTGGAGTA
GTGTACGTGTTATGCTGCAAGGACAATACGCAGGATAGAAATTCAAATGGCATAGGCTTTGCTGAATCCCCCCTAGGGAACTTAAAATCGAATCGAGAAG
GAGATTCTGATACTTGACAGAATTGGCTGGGATATATATTCAGGTATGGGATGTGTGCTACTTTGACTCACTTCTATGAAGAGTACCTGTGATACTAGCA
TGGATATGAGATTCGTTCTTCCCATTTGTAAAATAAAAATTCGTTGCCTAGCTTGTTGATGTGACAAAAGTACACATTATATCTGCACTTTAGATGGATG
TAGTATACATTTGGCTCTCACTGTTACCATCAGTGATACAAAATCGGGACATAACGAGAAGAAAAGCTAGGATGTGGCGCTCACTTTTGGCTATACATTT
GGCTCCATTAGAGGTTGAGATGATTCTTTTGGCTTCATTTCATAATTTTT

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.972422
Expected error %
0.758348
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At5g15470.1 Score 190 E Value 8e-49 Identity 30.80% Align. Length 278bp (37.07%) Frame 3
68418.m01811 glycosyl transferase family 8 protein contains Pfam profile: PF01501 glycosyl transferase family 8
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At3g01040.1 Score 188 E Value 2e-48 Identity 30.50% Align. Length 278bp (37.07%) Frame 3
68416.m00005 glycosyl transferase family 8 protein contains Pfam profile: PF01501 glycosyl transferase family 8
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAC01746.1| Score 190 E Value 4e-47 Identity 30.80% Align. Length 278bp (37.07%) Frame 3
putative protein [Arabidopsis thaliana] pir||T51525 hypothetical protein T20K14_80 - Arabidopsis thaliana
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
dbj|BAC43247.1| Score 190 E Value 4e-47 Identity 30.80% Align. Length 278bp (37.07%) Frame 3
unknown protein [Arabidopsis thaliana] gb|AAO64834.1| At5g15470 [Arabidopsis thaliana] ref|NP_197051.2| glycosyl transferase family 8 protein [Arabidopsis thaliana]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0067C09
Clone
Clone name
hba-67c9
LE_HBa0067C09
C02HBa0067C09
P067C09
Clone type
BAC
Contamination
none
Estimated length
71,917
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found