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Clone Read LE_HBa0066I13_SP6_50712

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0066I13_SP6_50712
Primer
SP6
ID from Seq. Facility
LE_HBa_066_I13-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
5 trimmed for vector and quality, 838 raw
Sequence
>LE_HBa0066I13_SP6_50712 (raw untrimmed)
TTTTCTTGCTCAGTAGCTATCGAATCTCTCAATCTATGTTTCTCTTCTTCACCCCCTATTATTCTTTTNCGCAGTTATNGCCGCATTGCATAGACGCTTC
TTAGACTTCATTCTTCGTAAGACGTTGCTTCGTATCGTTTAGAGTCCATATTCTACGTCTTCATGTATATAATAGTTCGATAGTGCGGGATTTTGGTACG
TTCTGTACAATTACTCATATGCATTATTTATTGATAATATGGTTCAAAGTATCTAGACGTTGAAATACTTATGATATCAATTTATCTAACCATTATTTCT
TTTCCCGCACACCTCAACTACGTTTCATCGGGTTACCTTACCACGTTCCACTGCAACATAGTACATGCTAATTCTATTTACCTTAGGCTCATGACACATA
TGAAAGAAATCATCTAGGAGACTTGATGCGAAATGATCTTTCTATAATGAACCTGACATATTTTAGATGTCTATTATCTACAGGATTGATCTGCTATGCT
CTTTTCATATCATCCTAACTGCTTCAGCACTATATCATGCAGATGGAGTAGTACTAATTATGCTAATTACGCCATTTACATCCTCGGTCGCCCTCTTCCA
CCTCTCGGCGACCTTGTACTAATCATATCATCCCCTTAGATACCTTCAAGCGCTTCTTACATCATAGCTAATTTAATAACTGCCNCATCTCTCAGCTTCA
CATTATCTATCCACTACTTTTCCGTATACCCTCCCTTACCTTTCTGCGCCACTAATAGCCTACCATTTCTTTTCCCTCTCTCTCTCATATCATTACTATT
CTTTCTAATTCTACTTTCCCTTTCTCTTCTCTCTCTTT
>LE_HBa0066I13_SP6_50712 (trimmed for quality and cloning vector)
ATCTT

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
 Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
1.05911
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0066I13
Clone
Clone name
hba-66i13
LE_HBa0066I13
P066I13
Clone type
BAC
Contamination
none
Estimated length
100,956
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found