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Clone Read LE_HBa0066F05_SP6_50552

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0066F05_SP6_50552
Primer
SP6
ID from Seq. Facility
LE_HBa_066_F05-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
518 trimmed for vector and quality, 927 raw
Sequence
>LE_HBa0066F05_SP6_50552 (raw untrimmed)
CGGGGGGTTAGCCGTATTGCTTACTGGGTTTCATCTAAAGGGAGAACTTTTGGATCTCCAATCAATGCTATTCCTAAACTGAGGCGACGTTTCATTCCAC
CACTGTAGCTTCCTGCTCTCACTTCGGCGACATCATCGAGCTTCACATCAGCCAACAATTTTTTAGCTTCCTGCCATTCAAGTAGATCGAAGTTTTTAGT
GAGAAGTCATATGCAATAGCCAGTTGTTCAATCAAAGAGTCAATGAAAAATTGTGGCAATTTATTTAGGATGCAAACATATATGACTTATGAATATAGGC
CAGTGAGGTCACAAATATTTAGATATATTTAATCATTTCGCATTCTTTTACTCCGAGAAGGAGTAGGGATGGTTTCGGATACTTACTGATCTTTTTGATG
TTCGGGATAAGCCTTTGATGGTGGCAAAAAGTTCAAGGTGCTCTTGTCCAGATAATGCATCCCAAAGTGTGTCAAACTGAAGTATGGCCACACAAAGTCA
ATGGAAGAAAAAACCAAGCCAAGAAAGAGTGCAGAACTTGTTAGAAGACTCAAATCGCTACCTGTGAGCAGACTCCTAACAGCTTTCTTATGTTGGAGAT
ACCACCCGAACTTCGAACAGAGTTTCCATCGATTAGTGCTGTCCGAAATCTACATATTTAAGTTAAGCAATTCATGCCTCAATTGAAAGAGAACATGGCC
GTACTTGGATCTTCTAACAAAACAGCATTACAAGTTCCCCGAGTGGATGGAATTATACCCCTCCACAACTAATTATAGTTGTTTTTCCAGTTCAAGTTTC
GATCCAAGGAACGTAATAAATGATTCTCTAAAGATTTACCTCATTCTCTGAATTAACAATCCCCTTTTCTTTCACCCCTCTTTCCGATATCTTCACTGGT
GGTCTGATAAGAGTTGGTAAATTGCGA
>LE_HBa0066F05_SP6_50552 (trimmed for quality and cloning vector)
TTTGGATCTCCAATCAATGCTATTCCTAAACTGAGGCGACGTTTCATTCCACCACTGTAGCTTCCTGCTCTCACTTCGGCGACATCATCGAGCTTCACAT
CAGCCAACAATTTTTTAGCTTCCTGCCATTCAAGTAGATCGAAGTTTTTAGTGAGAAGTCATATGCAATAGCCAGTTGTTCAATCAAAGAGTCAATGAAA
AATTGTGGCAATTTATTTAGGATGCAAACATATATGACTTATGAATATAGGCCAGTGAGGTCACAAATATTTAGATATATTTAATCATTTCGCATTCTTT
TACTCCGAGAAGGAGTAGGGATGGTTTCGGATACTTACTGATCTTTTTGATGTTCGGGATAAGCCTTTGATGGTGGCAAAAAGTTCAAGGTGCTCTTGTC
CAGATAATGCATCCCAAAGTGTGTCAAACTGAAGTATGGCCACACAAAGTCAATGGAAGAAAAAACCAAGCCAAGAAAGAGTGCAGAACTTGTTAGAAGA
CTCAAATCGCTACCTGTG

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.963146
Expected error %
0.266187
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At5g61690.1 Score 64 E Value 6e-11 Identity 26.50% Align. Length 116bp (22.39%) Frame 1
68418.m07740 ABC transporter family protein ABC transport protein, Dictyostelium discoideum, PIR:T18288
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0066F05
Clone
Clone name
hba-66f5
LE_HBa0066F05
P066F05
Clone type
BAC
Contamination
none
Estimated length
127,893
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found