Notice: We have moved solgenomics to a new server and hosting system which caused some instability over the last few days. We apologize for any inconvenience.

Clone Read LE_HBa0061F11_T7_47493

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0061F11_T7_47493
Primer
T7
ID from Seq. Facility
LE_HBa_061_F11-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
832 trimmed for vector and quality, 991 raw
Sequence
>LE_HBa0061F11_T7_47493 (raw untrimmed)
TATAACTGGGTACCCGGGGGATCTCTAGAGTCGACCTGCAGGCATGCAAGCTTGGTGTTTTCCTCTTCTTCTCCTTTGTTCCTCTCTCAATTCGTTTCTC
TTTCCTTCTCTTTGCTCTTTCTAATTTTCTTTATTCAACCCTCTTTCTTTTACCCTAATTAATATATAATTAAGAATAAAAGATGGAAATAATACCCCAC
TAATTAACTTAGGGTTACCTCTTTTTACCCCCAAGAATTTGAGTTATTAATATAAACCCACGAAATCTATAATTAAGGAAAGAATAGTCCAAACACATCC
CTTAAAACGTGTAAGGAAATCTGATTCTGCCTGGGATTTGCGCAACCTGTGACGGGCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGGT
CAGAGAGTCAATTTCCACTAAACAATCTATGACGGTCCGTCACGCCTGTGACGGTCCGTCCTGCCATTCCGTCACGCCTGTGACGATCCGTCCTGCCATT
CCGTCACGGAGTTCAGAGAGTCGATTTCAGCACCCAAATTTCAGAATTTCTAAGTGTTTAGAAACGAGACCCTGCGACGATCCGTCGTGGGGTCCGTCGC
TTCTGCCAGTTTTTCCAAAATTGAAGTCTGTTGCTCAAAACGACTAAACGGGTCGTTACATTAGATACCAATTTACCCATCGTTCGTCCCCGAACGATCA
AAAGAAGGAAAACAAGGGCGAAAAGGAGTACCAGAATCTGTAAACAGATGTGGGTATTTTTCTCGCATATCCGCCTCCTTCTCCCAAGTGGCTTCTTCAA
CCGGTCGATTCTTCCATTGCACCTTGATGGATGCAATCTCTCTTGACCTCAACTTGCGAACTTCTCTATCTAAAATAGCAACCAGCTCCTCCTCATAAGA
ACAGTTCTCTTCAGCAAACTGAATCCCACGGATATGTAATTTCATCCCCATGTATCTTTCAACATCGAACTTGGAATCCGATGCCCTCGGA
>LE_HBa0061F11_T7_47493 (trimmed for quality and cloning vector)
AGCTTGGTGTTTTCCTCTTCTTCTCCTTTGTTCCTCTCTCAATTCGTTTCTCTTTCCTTCTCTTTGCTCTTTCTAATTTTCTTTATTCAACCCTCTTTCT
TTTACCCTAATTAATATATAATTAAGAATAAAAGATGGAAATAATACCCCACTAATTAACTTAGGGTTACCTCTTTTTACCCCCAAGAATTTGAGTTATT
AATATAAACCCACGAAATCTATAATTAAGGAAAGAATAGTCCAAACACATCCCTTAAAACGTGTAAGGAAATCTGATTCTGCCTGGGATTTGCGCAACCT
GTGACGGGCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGGTCAGAGAGTCAATTTCCACTAAACAATCTATGACGGTCCGTCACGCCTG
TGACGGTCCGTCCTGCCATTCCGTCACGCCTGTGACGATCCGTCCTGCCATTCCGTCACGGAGTTCAGAGAGTCGATTTCAGCACCCAAATTTCAGAATT
TCTAAGTGTTTAGAAACGAGACCCTGCGACGATCCGTCGTGGGGTCCGTCGCTTCTGCCAGTTTTTCCAAAATTGAAGTCTGTTGCTCAAAACGACTAAA
CGGGTCGTTACATTAGATACCAATTTACCCATCGTTCGTCCCCGAACGATCAAAAGAAGGAAAACAAGGGCGAAAAGGAGTACCAGAATCTGTAAACAGA
TGTGGGTATTTTTCTCGCATATCCGCCTCCTTCTCCCAAGTGGCTTCTTCAACCGGTCGATTCTTCCATTGCACCTTGATGGATGCAATCTCTCTTGACC
TCAACTTGCGAACTTCTCTATCTAAAATAGCA

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.973745
Expected error %
0.484405
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38742.1| Score 84 E Value 4e-15 Identity 24.50% Align. Length 158bp (18.99%) Frame 2
hypothetical protein PGEC093P17.31 [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAV31171.1| Score 76 E Value 1e-12 Identity 18.00% Align. Length 182bp (21.88%) Frame 2
putative polyprotein [Solanum tuberosum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0061F11
Clone
Clone name
hba-61f11
LE_HBa0061F11
C07HBa0061F11
P061F11
Clone type
BAC
Contamination
none
Estimated length
146,047
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found