Clone Read LE_HBa0059L19_SP6_47028

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0059L19_SP6_47028
Primer
SP6
ID from Seq. Facility
LE_HBa_059_L19-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
665 trimmed for vector and quality, 835 raw
Sequence
>LE_HBa0059L19_SP6_47028 (raw untrimmed)
CTTTTCCATGGTGGGCANGTNCCACTNCACAACCCANGCCACATGATAGATATTCATGAAGAAATGGCTCAGATGTGAACTGACCTTGGGTTGGTACTAA
AACATGTCACTGGGGGTGCAGAAAAGATTAATACAGTCAACTACTTGGCGAAACCACCACCTCCAATCGATGAGTGTTATTATGAGGAGGATTCCTATGC
AGTAAATGAACAGATGGGGGGTTTCCGACTATGTTCCCAAGGCTCTAATCAGGAGAATTGGCGCCAAGGTCAAGGGAACCAAGGTCGGAACTATGGTAAC
TACAATCGTGAGGGTCATTATGTCCGAGATAGAAACTACAATCGCGACAATAACTTCAACAGGGGTAACTATGGTAATAGAAACGACAAGAATGGACCCT
ATGTTCCTCCTCAAAATCGTGAAGTTACTCCTAGGGATGGTGGAGGTAGTATGTCGCGAGTTGAGGATATGTTGCATAAAATGATGAGGAGGTTCGATGC
TAGTGATGAGCACAATAAAGAGTTGAGAATGATTTAGCGGGTATTGGAAAAAAAGTCGATACACATGCAATATCGATTAAGCAACTTGAGTTACAATTGG
CCCAATTATCTGCAACTGTGAACACTCGGCAACCGGGCACTCTTCCTTGCAACACTGTCCAAAATCTGAAAAATGATGGACATTGTATGGCAATTACTAC
TCGCGGTGGCAAGCAAACCATTGACCCCCCTATGCAATCTAATGAGAATGAGGCGAACAAAGACACTTATAAAATGGGAAATGTTTGATGCTTATTTTAG
AGGATAACCTTTGCAGAAAATGCTTAAAGTGGCTA
>LE_HBa0059L19_SP6_47028 (trimmed for quality and cloning vector)
GATATTCATGAAGAAATGGCTCAGATGTGAACTGACCTTGGGTTGGTACTAAAACATGTCACTGGGGGTGCAGAAAAGATTAATACAGTCAACTACTTGG
CGAAACCACCACCTCCAATCGATGAGTGTTATTATGAGGAGGATTCCTATGCAGTAAATGAACAGATGGGGGGTTTCCGACTATGTTCCCAAGGCTCTAA
TCAGGAGAATTGGCGCCAAGGTCAAGGGAACCAAGGTCGGAACTATGGTAACTACAATCGTGAGGGTCATTATGTCCGAGATAGAAACTACAATCGCGAC
AATAACTTCAACAGGGGTAACTATGGTAATAGAAACGACAAGAATGGACCCTATGTTCCTCCTCAAAATCGTGAAGTTACTCCTAGGGATGGTGGAGGTA
GTATGTCGCGAGTTGAGGATATGTTGCATAAAATGATGAGGAGGTTCGATGCTAGTGATGAGCACAATAAAGAGTTGAGAATGATTTAGCGGGTATTGGA
AAAAAAGTCGATACACATGCAATATCGATTAAGCAACTTGAGTTACAATTGGCCCAATTATCTGCAACTGTGAACACTCGGCAACCGGGCACTCTTCCTT
GCAACACTGTCCAAAATCTGAAAAATGATGGACATTGTATGGCAATTACTACTCGCGGTGGCAAG

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.977594
Expected error %
0.0684181
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38730.1| Score 100 E Value 5e-20 Identity 69.70% Align. Length 658bp (98.95%) Frame 2
putative reverse transcriptase [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0059L19
Clone
Clone name
hba-59l19
LE_HBa0059L19
P059L19
Clone type
BAC
Contamination
none
Estimated length
117,929
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found