Clone Read LE_HBa0059I09_SP6_46864

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0059I09_SP6_46864
Primer
SP6
ID from Seq. Facility
LE_HBa_059_I09-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
689 trimmed for vector and quality, 865 raw
Sequence
>LE_HBa0059I09_SP6_46864 (raw untrimmed)
AACCCCATACATTCTTTTGATGTGGGATACCTTAAAACACCACCCCCCTCCTCATTGCTTACCAAGAACCAATTCCTTCAAATCCATCAATGATGGATCA
AGCTGTTTCTTAGACTTCACATCCTTCACCAAAGACGATTCAGAGTTATGATGGACCATAAAACCCTCATTTGGAGAATCTTCCAATCGAGCACCCAAAT
GATCCAAACTATGAACATCTTTCACTAGGTATTTCTTGTCTTCTTCCACATGAGACACACTACCCATTATCATACAACTTAGAGCATCCGCAACCACATT
GGCTTTGCCAAGGTTGTAGAAAACACCCATGTCATAATCTCTCAATAATTCAAACAACATTCTTTGTTGGATATTTAACTCCTTTTGGGTAAATACATAT
TTAAGAATCTTATGGTCGATATACACATCAATATGAAAACTATATATATAATGCCTCCATATTTTCAAGGTAAACACTATGGCCGCTAACTAAAGATCAT
GAGTTGAATAATTACTCTCATGCACCTTAAGTTGTATGGAGTCATAGTATACTACGTTATCATGTTGCATAAGAACACACCCCAAGCCCACTCGGGATGT
ATCAATATATACCACAAAGCCTTTTGTACCCTCCACTAAGGTAAACACCGGAGCAGAGGTAAGGTTATCTTTCAAACTTTTGAAGCTTCTTTCATATGCC
TCCAACCACTCATATTTCACTCTCATTTGGGGCAAAGTAGTAAAAAGAAGTGGCAAGGATGCAAAACCCTCCATTAATCCTCCTATAGTATTCTCCTATA
CCCAAAAAAACTCCTAAGGTCCAATTGAAGTCAAAAAGCCCTAGGGCCATTTTTTTAACCCCCCT
>LE_HBa0059I09_SP6_46864 (trimmed for quality and cloning vector)
TACCTTAAAACACCACCCCCCTCCTCATTGCTTACCAAGAACCAATTCCTTCAAATCCATCAATGATGGATCAAGCTGTTTCTTAGACTTCACATCCTTC
ACCAAAGACGATTCAGAGTTATGATGGACCATAAAACCCTCATTTGGAGAATCTTCCAATCGAGCACCCAAATGATCCAAACTATGAACATCTTTCACTA
GGTATTTCTTGTCTTCTTCCACATGAGACACACTACCCATTATCATACAACTTAGAGCATCCGCAACCACATTGGCTTTGCCAAGGTTGTAGAAAACACC
CATGTCATAATCTCTCAATAATTCAAACAACATTCTTTGTTGGATATTTAACTCCTTTTGGGTAAATACATATTTAAGAATCTTATGGTCGATATACACA
TCAATATGAAAACTATATATATAATGCCTCCATATTTTCAAGGTAAACACTATGGCCGCTAACTAAAGATCATGAGTTGAATAATTACTCTCATGCACCT
TAAGTTGTATGGAGTCATAGTATACTACGTTATCATGTTGCATAAGAACACACCCCAAGCCCACTCGGGATGTATCAATATATACCACAAAGCCTTTTGT
ACCCTCCACTAAGGTAAACACCGGAGCAGAGGTAAGGTTATCTTTCAAACTTTTGAAGCTTCTTTCATATGCCTCCAACCACTCATATT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.952411
Expected error %
0.0807542
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38733.1| Score 274 E Value 2e-72 Identity 21.20% Align. Length 656bp (95.21%) Frame 2
putative retrotransposon gag protein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38792.1| Score 258 E Value 1e-67 Identity 19.80% Align. Length 635bp (92.16%) Frame 2
putative gag-pol polyprotein [Solanum demissum] gb|AAT38791.1| putative gag-pol polyprotein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0059I09
Clone
Clone name
hba-59i9
LE_HBa0059I09
P059I09
Clone type
BAC
Contamination
none
Estimated length
127,078
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found