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Clone Read LE_HBa0059I05_T7_46857

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0059I05_T7_46857
Primer
T7
ID from Seq. Facility
LE_HBa_059_I05-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
694 trimmed for vector and quality, 950 raw
Sequence
>LE_HBa0059I05_T7_46857 (raw untrimmed)
GATAACTGGGTCCGGGGGGTCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTGTAACATCAAAAATCCTCCAATATCCTGAGGACTTCGATAGAGAAGTT
AGAGTTTTAGCAAAAGCAAGGCATCCAAATCTAATATCCTTAAAAGGGTATTACTGGACTCCTCAACTTCAGCTTCTAGTATCAGATTATGCACCAGAAG
GAAGTTTACAAGCCATACTGCACGAAAGGCCTTCGTCTTCAACTTCCCTTCCCCTGTCTTGGTCCACTCGATTCAACATTGTGCTTGGAACAGCCAAGGG
ACTAGCACATTTGCACCACGCGTTTAGGCCAGCAATCATACACTACAACATAAAGCCTAGCAACATTCTCCTTGATGAGAACTTCAACCCGAGAATATCT
GATTTCGGGCTGGCAAGGCTAGTGACAAAGCTCGATAAGCACATGATAAGCAGCAGGTTCCAGAGTGCACTAGGCTATGTAGCCCCTGAATTGGCATGCC
AGAGCTTAAGGGTGAATGAGAAGTGTGACGTTTATGGTTTTGGGATGTTGATTCTTGAAATTGTCACTGGGAGAAGGCCAGTTGAGTATGGAGAGGACAA
TGTGTTGATACTCAATGATCATGTGAGAGTTTTGCTTGAGCAAGGCAATGTGTTGGAGTGTGTTGATCCAACTATGAATACTTTTCCTGAAGAGGAAGTT
TTGCCTGTTCTGAAGTTGGCATTGGTGTGCACTTCTCAAATACCACAAGTAGGCCTTTCATGGCTGAGTGGTTCAAATCTTGCAGGTCATGAAAACGCCT
GTTCCTCAAAGAATGGAAGAATATAAAACCTTGTTACCCACTTGAGGAATTTCCCTTTCTCTTTAACTTCCATCAAAACCCATTGTGGGTAACTTACCTC
CTAAACGGAGGTTTTGGAAAGAATATGGTAAAGAGATTTTTTCCTTCCCC
>LE_HBa0059I05_T7_46857 (trimmed for quality and cloning vector)
AGCTTGTAACATCAAAAATCCTCCAATATCCTGAGGACTTCGATAGAGAAGTTAGAGTTTTAGCAAAAGCAAGGCATCCAAATCTAATATCCTTAAAAGG
GTATTACTGGACTCCTCAACTTCAGCTTCTAGTATCAGATTATGCACCAGAAGGAAGTTTACAAGCCATACTGCACGAAAGGCCTTCGTCTTCAACTTCC
CTTCCCCTGTCTTGGTCCACTCGATTCAACATTGTGCTTGGAACAGCCAAGGGACTAGCACATTTGCACCACGCGTTTAGGCCAGCAATCATACACTACA
ACATAAAGCCTAGCAACATTCTCCTTGATGAGAACTTCAACCCGAGAATATCTGATTTCGGGCTGGCAAGGCTAGTGACAAAGCTCGATAAGCACATGAT
AAGCAGCAGGTTCCAGAGTGCACTAGGCTATGTAGCCCCTGAATTGGCATGCCAGAGCTTAAGGGTGAATGAGAAGTGTGACGTTTATGGTTTTGGGATG
TTGATTCTTGAAATTGTCACTGGGAGAAGGCCAGTTGAGTATGGAGAGGACAATGTGTTGATACTCAATGATCATGTGAGAGTTTTGCTTGAGCAAGGCA
ATGTGTTGGAGTGTGTTGATCCAACTATGAATACTTTTCCTGAAGAGGAAGTTTTGCCTGTTCTGAAGTTGGCATTGGTGTGCACTTCTCAAAT

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.978833
Expected error %
0.392798
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At3g28040.1 Score 317 E Value 3e-87 Identity 23.00% Align. Length 689bp (99.28%) Frame 1
68416.m03500 leucine-rich repeat transmembrane protein kinase, putative contains Pfam profiles: PF00560 leucine rich repeat, PF00069 eukaryotic protein kinase domain
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At3g56370.1 Score 241 E Value 3e-64 Identity 17.20% Align. Length 689bp (99.28%) Frame 1
68416.m06269 leucine-rich repeat transmembrane protein kinase, putative leucine-rich receptor-like protein kinase - Malus domestica, EMBL:AF053127
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|NP_914215.1| Score 325 E Value 5e-88 Identity 23.00% Align. Length 689bp (99.28%) Frame 1
putative receptor protein kinase [Oryza sativa (japonica cultivar-group)] dbj|BAB92869.1| putative receptor-like protein kinase [Oryza sativa (japonica cultivar-group)]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
dbj|BAB01126.1| Score 317 E Value 1e-85 Identity 23.00% Align. Length 689bp (99.28%) Frame 1
receptor protein kinase [Arabidopsis thaliana] ref|NP_189443.2| leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0059I05
Clone
Clone name
hba-59i5
LE_HBa0059I05
C09HBa0059I05
P059I05
Clone type
BAC
Contamination
none
Estimated length
95,676
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found