Notice: We have moved solgenomics to a new server and hosting system which caused some instability over the last few days. We apologize for any inconvenience.

Clone Read LE_HBa0058P20_SP6_46454

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0058P20_SP6_46454
Primer
SP6
ID from Seq. Facility
LE_HBa_058_P20-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
703 trimmed for vector and quality, 847 raw
Sequence
>LE_HBa0058P20_SP6_46454 (raw untrimmed)
TAAATGGTCTCCGCCTCACTGTGAGGTGTCCNTTCTTAGTCGACCAGGTCGAGTTGTTTCACAAGCGACTGGGTCATCCATCTCCTACAATTTTATGTTC
CCCTCCTTTTAGTAAAACCCCCTCAGATATCAAACAATTAGAGTCGTGTGAGATCTGTTTTTATTCCAAGCAAACTCGCTCAAGTTTTCCTTCTAGTTCT
AATAAAGTTGTTTCCATTTTTGATTTAATTCATTGTGATTTATGGGGTCCTTACTCTACCTGTCTATCTTCTGGGTCACATTATTTTTTGACTATTGTAG
ATGATAAGTCTCGAGCTATATGGGTGTACCTCATAAGTGATAAAAGTGAAGTCACAACTTGCATAAAAAATTCTTTACCTTGATCCAAACTCAGTACCAT
AAAACTATAAAAATTATCCGATCTGACAATGGTACCGAATTTCTTAATAACCCTCTTCGTCAGTTTTACCACGACATGGGCGTCTTTCTCCAAACATCAT
GCGTCAGAACCCCCCAACAAAATGGGAGGGTCGAGCGCAAACACCTTCACATATTAAACGTGGCACACTCCTTAATGTTCCAGGCGACCCTACCAGTCGA
ATTTTGGGGGGAGTGTGTACGTACTGCAGTTTATCTCATCAATCGCACCCTTAGCCGTGTCCTCGGTGGCAAGTCTCTATTAGAAATGATAAATAAAACC
CCACCCGATATTTCCCAGTTACGTGTTTTCGGGTGCCTGTATTTTGTCCGAAATATCCAGCGTCCACCAAAAAAATTCGCACCCCGCAGTCTCAAAGGTA
TGTTTCCTCGGTTTTCCGTCCGGAACGAAAAGGTTGAAGGGGTATAC
>LE_HBa0058P20_SP6_46454 (trimmed for quality and cloning vector)
GTCGACCAGGTCGAGTTGTTTCACAAGCGACTGGGTCATCCATCTCCTACAATTTTATGTTCCCCTCCTTTTAGTAAAACCCCCTCAGATATCAAACAAT
TAGAGTCGTGTGAGATCTGTTTTTATTCCAAGCAAACTCGCTCAAGTTTTCCTTCTAGTTCTAATAAAGTTGTTTCCATTTTTGATTTAATTCATTGTGA
TTTATGGGGTCCTTACTCTACCTGTCTATCTTCTGGGTCACATTATTTTTTGACTATTGTAGATGATAAGTCTCGAGCTATATGGGTGTACCTCATAAGT
GATAAAAGTGAAGTCACAACTTGCATAAAAAATTCTTTACCTTGATCCAAACTCAGTACCATAAAACTATAAAAATTATCCGATCTGACAATGGTACCGA
ATTTCTTAATAACCCTCTTCGTCAGTTTTACCACGACATGGGCGTCTTTCTCCAAACATCATGCGTCAGAACCCCCCAACAAAATGGGAGGGTCGAGCGC
AAACACCTTCACATATTAAACGTGGCACACTCCTTAATGTTCCAGGCGACCCTACCAGTCGAATTTTGGGGGGAGTGTGTACGTACTGCAGTTTATCTCA
TCAATCGCACCCTTAGCCGTGTCCTCGGTGGCAAGTCTCTATTAGAAATGATAAATAAAACCCCACCCGATATTTCCCAGTTACGTGTTTTCGGGTGCCT
GTA

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.974439
Expected error %
0.0591581
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAG50751.1| Score 146 E Value 5e-56 Identity 57.60% Align. Length 688bp (97.87%) Frame 2
polyprotein, putative [Arabidopsis thaliana] pir||F96610 probable polyprotein T8L23.26 [imported] - Arabidopsis thaliana
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
dbj|BAB10743.1| Score 145 E Value 3e-56 Identity 56.80% Align. Length 688bp (97.87%) Frame 2
retroelement pol polyprotein-like [Arabidopsis thaliana]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0058P20
Clone
Clone name
hba-58p20
LE_HBa0058P20
P058P20
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found