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Clone Read LE_HBa0058G17_T7_46017

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0058G17_T7_46017
Primer
T7
ID from Seq. Facility
LE_HBa_058_G17-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
640 trimmed for vector and quality, 912 raw
Sequence
>LE_HBa0058G17_T7_46017 (raw untrimmed)
TTCGGTCCGGGGGGATTCTCTAGAGTCGACCTGCAGGCATGCAAGCTTTCAGAAGCTCAAGACCTTGTTGACTACCGCACCAATTCTTACCCTGCCAGTG
GAGGGTAAGAATTTTATTGTTTATTGTGATGCATCCTATTCGGGTTTGGGTGCAGTGCTAATGCAAGAGAAGAATGTAATTGCTTATGCTTCGAGGCAAT
TAAAAGTTCATGAACGTAATTGTCCGACCCATGATTTGGAGTTGGTTGTGGTAGTGTTTGCATTAAAGCAATGGAGACATTATCTATATGGGGTTAAATG
TGAAGTCTATACGATCATCGTAGTTTACAGTATGTCATTACTCAGAAAGATTTGAATTTGAGATAGAGGAGGTGGATGGAACTACTGAAGGACTATGATA
TCACTATCTTGTATCATCCGGGAAACGCTAATGTTGTGGCAGATGCTTTAAGTAGAAAGGCAGGGAGCATGGGAAGTCTAGCCCACTTGCAGGTTTCTAG
ACGCCCATTGGCTAGAGAGGTTCTGACTCTGGCTAATGACCTTATGAGGCTAGAAGTAAATGAGAAGGGAGGATTTTTGGCCTGTGTGGAGGCAAGATCT
TCCTTTCTTGATAAGATTAAGGGAAAGCAGTTTACCGATGAGAAAACTGATCCGGATCCGAGATAAGGTGTTGCCAGGAGAGGCTAAACAAACAAAAATC
GATAAGGAAGGTGCTTTGATAACTAAAGGAAAGGGATGTGGTCCCCCGCGTCCATTGACTTCACTTCTTTATTATTTTTTATAAAGGCTCCAACTTTTCA
AGGTATTTCTATAATTCCCTTGGTTGCAAACCACTTATTCAACTTCGGTTCCTTATATCTATCATTCTTTCGGTGGGAATCAATCCCTTATCACACCGCT
TCCACCTCCCTT
>LE_HBa0058G17_T7_46017 (trimmed for quality and cloning vector)
AGCTTTCAGAAGCTCAAGACCTTGTTGACTACCGCACCAATTCTTACCCTGCCAGTGGAGGGTAAGAATTTTATTGTTTATTGTGATGCATCCTATTCGG
GTTTGGGTGCAGTGCTAATGCAAGAGAAGAATGTAATTGCTTATGCTTCGAGGCAATTAAAAGTTCATGAACGTAATTGTCCGACCCATGATTTGGAGTT
GGTTGTGGTAGTGTTTGCATTAAAGCAATGGAGACATTATCTATATGGGGTTAAATGTGAAGTCTATACGATCATCGTAGTTTACAGTATGTCATTACTC
AGAAAGATTTGAATTTGAGATAGAGGAGGTGGATGGAACTACTGAAGGACTATGATATCACTATCTTGTATCATCCGGGAAACGCTAATGTTGTGGCAGA
TGCTTTAAGTAGAAAGGCAGGGAGCATGGGAAGTCTAGCCCACTTGCAGGTTTCTAGACGCCCATTGGCTAGAGAGGTTCTGACTCTGGCTAATGACCTT
ATGAGGCTAGAAGTAAATGAGAAGGGAGGATTTTTGGCCTGTGTGGAGGCAAGATCTTCCTTTCTTGATAAGATTAAGGGAAAGCAGTTTACCGATGAGA
AAACTGATCCGGATCCGAGATAAGGTGTTGCCAGGAGAGG

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.967003
Expected error %
0.430935
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38745.1| Score 140 E Value 4e-62 Identity 62.70% Align. Length 544bp (85.00%) Frame 2
putative polyprotein, 3'-partial [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT66771.1| Score 140 E Value 2e-61 Identity 61.80% Align. Length 544bp (85.00%) Frame 2
putative polyprotein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0058G17
Clone
Clone name
hba-58g17
LE_HBa0058G17
C08HBa0058G17
P058G17
Clone type
BAC
Contamination
none
Estimated length
109,165
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found