Clone Read LE_HBa0058B11_SP6_45764

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0058B11_SP6_45764
Primer
SP6
ID from Seq. Facility
LE_HBa_058_B11-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
1 trimmed for vector and quality, 1749 raw
Sequence
>LE_HBa0058B11_SP6_45764 (raw untrimmed)
GTAGAGAGCGCGCCACTTAGACGGATGCGTGGTGTGCGCCGTGCTTCNTGAATAGCTCTGTTCTGTCTATATAGCACAGCCACCGAGTTTCTTACGCGGC
TGCAGCCAGGTACTCCCGCGCGAGTCACCTGCGCGCCGAGCGTGAGCGCGAGCGTTTACAACCACGGATGCGCGCACGAGACTCGAGTTCGGATCGCTGA
CGATTAACGAGATAGGCGCTCGCGTGACCCTCTCTCGACGACATGTGCTATCCTACACAGAGNATGCGCAAGTGCGCGNACGCGTGATTGCACNCTCCAC
GACCACCTGCGCGTTNGACGCAANAGTACCACGAGCACGCTACANGAGATGATAAGCATTCGCNACAACACTCNACTAGTAACGTNATCTANGTAATCGT
ACGCACTACACGCACTAAGTGCATCGCGCATGACCTACTTTACATGAGCNATGACTGCCGTGTATCCCGCCACATATCTNGTGCTACTACGCGGTGATCG
GAGCAGCCACCGCGACGGCGCGTACAAGCAGCGCGACCTGCTCGTACTACCTGCGANGACGTGTGGTGATCATAGNGCACTAAAGCNCTTCTGACAGTNG
CCATCACTACGAGCGAGCAGTGCCGACCCGTCACGCTCCACCGCTCCGCCAGCCCTTACTCTGCTACACTTGGCTACTCGTCCTGCTCTTCTCCCATGTC
GCTGCGGCACATCTCATGCGAATACGTGCATACACATATCGCCACTCNACTCTCCATCGCTATATGCCCGCCTGGTGACGACCGTTCGGTCACNCTNCGT
CNCATACGCCTCTCNACACTACGCNCGGTAGCTCCCTCGCATAGCGTCTGGCGACTCGCCGAACGTANCCNCGCAACGACGTATCTGGATCATCTCTCCG
ACTACTGTGGACGGCCTAATACCTNTCTTATAAAGATAGCGTGTATCAAGCTGTGCTGTATCCACGCCCGNCTGAGCGAGNTGCCTGGCCACTCGACCAG
CGCGTCTGCCGGCTGCATCCATACGTGATCCGCGCNCGCGCGTACCTCTCTNCCCCACAGCCACGTCAACCTCGCGGCTTTCACCNTCATCAGCACGCGT
GACTACCGGCACGTGCAATGCCCATAGTGCCTGTGCGTGTTAACTGTCCACGCCACACCTGTNGACGGTNGCGTGGCGCTCCGCGAGTCTNACTAGCGTT
CANTNCGTACTATGCGCGATCCTNATTTACTCTTGGACATTACCACNACTTGTTTCTTAGTTCACATCTCACCCCTCTCCCTGCCATCTGACCTCCATAC
CACGCTGACGACCAACACGCAATGACACTGCATGCATGACCGCTGCCTCACGGACCATCACCTCCTCCTTGCGTGCCGGATCGCACTNCCCATGCCACTC
CCCACTCATCTCGCCACACGCGCACTGCACTTGCACTCACTCTGGTCCTCTCGTACATCATTNCTAGTGCTCTGATCGCGACCCTGCGACATCGATGCTC
GTCGACTGATTACGTCTGCATAGTATCATGCATCGTCACATGCCACANGACGTGAGCGGCATGCCAGAGAACAGTACAGCAATCGAACATACACACACAT
GACAGGCACGATTGCAGACATCTGGCACNACGCACATGCGCGCGCAGGTGCCCNGNTNTCTATGCTGCGATNCTAANANNTGCCTGTGNGNATCTCGTAA
ACACAACTGAGANACGACCNTGCACANCGNGCACTGCTGCCTGCGTATG
>LE_HBa0058B11_SP6_45764 (trimmed for quality and cloning vector)
G

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • High predicted error rate
  • Low complexity
 Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
100
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0058B11
Clone
Clone name
hba-58b11
LE_HBa0058B11
P058B11
Clone type
BAC
Contamination
none
Estimated length
113,414
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found