Clone Read LE_HBa0057G21_SP6_45256

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0057G21_SP6_45256
Primer
SP6
ID from Seq. Facility
LE_HBa_057_G21-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
733 trimmed for vector and quality, 853 raw
Sequence
>LE_HBa0057G21_SP6_45256 (raw untrimmed)
TACGCGCACACATGNNTGTTCTTTTCCTTTTTCTATGAAACCATCTGGGTTGTCGCATAAATATGCTTTCATCAAGACTTCCATTAAGGAAAGCTGTCTT
GACATCCATTTGTCAAATCTCATAATCATAATGAGCAGCAATGGATAAGAGAATTCTAATAGACTTAAGCATGACTACTGGCGAAAAAGTTTCCTCATAG
TCGATCCCTTCTTTTTGAGTAAACCCTTTTGCAACAAGTCTAGCTTTGTAAGTTTGCACTTGTCCATCTACTCCTCTCTTTTTCTTATATCTTGCATCCA
ATGGGTTTGACTCCATCTACAGGTGGTTCTACAAGATCCCAGACTTTGTTAGAGTACATAGACTCCATTTCTGATTTCATAGCAACAATCCATTTTTCTG
CATCTTTATATTGTAGTGCTTCGTCGTAATTCACGGGTTCGGTATTCGACTCTTCAGGGATTCTGTCAAAAGACTCTCCCAAGAGTGCATACCGAAGTGG
TTTTCTTATCACTCTCCCACTATGACGAGACACTACAGTTGCAGGGGTAGGTTCAGAGAGATTTGCATTATTATGATCTTGTGGTGGAACCACATCATTT
TTAGGATCTTGAGTTTCCATGTTATCTTCAGTATCTTGCGGTGCAGAGATATCAACAACTTCTTCCTCTAATGTAATCTGTTCACTATTACTCCCACTAC
CTTGATTCAATGAATTTTCAAGATCTTGTACTTGCAGAATTTTATGTTTGTTTACATCTCTCCCACTATTATAATGCAATGGTATGTTAACTCTAACATG
TGGAGGTTGGAAATTGGTTTTCATTATTTTTCAGTAGAATTGATTTGGTTTTC
>LE_HBa0057G21_SP6_45256 (trimmed for quality and cloning vector)
TTCTTTTCCTTTTTCTATGAAACCATCTGGGTTGTCGCATAAATATGCTTTCATCAAGACTTCCATTAAGGAAAGCTGTCTTGACATCCATTTGTCAAAT
CTCATAATCATAATGAGCAGCAATGGATAAGAGAATTCTAATAGACTTAAGCATGACTACTGGCGAAAAAGTTTCCTCATAGTCGATCCCTTCTTTTTGA
GTAAACCCTTTTGCAACAAGTCTAGCTTTGTAAGTTTGCACTTGTCCATCTACTCCTCTCTTTTTCTTATATCTTGCATCCAATGGGTTTGACTCCATCT
ACAGGTGGTTCTACAAGATCCCAGACTTTGTTAGAGTACATAGACTCCATTTCTGATTTCATAGCAACAATCCATTTTTCTGCATCTTTATATTGTAGTG
CTTCGTCGTAATTCACGGGTTCGGTATTCGACTCTTCAGGGATTCTGTCAAAAGACTCTCCCAAGAGTGCATACCGAAGTGGTTTTCTTATCACTCTCCC
ACTATGACGAGACACTACAGTTGCAGGGGTAGGTTCAGAGAGATTTGCATTATTATGATCTTGTGGTGGAACCACATCATTTTTAGGATCTTGAGTTTCC
ATGTTATCTTCAGTATCTTGCGGTGCAGAGATATCAACAACTTCTTCCTCTAATGTAATCTGTTCACTATTACTCCCACTACCTTGATTCAATGAATTTT
CAAGATCTTGTACTTGCAGAATTTTATGTTTGT

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.956353
Expected error %
0.132672
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At4g23160.1 Score 100 E Value 6e-22 Identity 15.60% Align. Length 320bp (43.66%) Frame 3
68417.m03342 protein kinase family protein contains Pfam domain PF00069: Protein kinase domain
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAU90298.1| Score 264 E Value 1e-87 Identity 85.60% Align. Length 594bp (81.04%) Frame 3
putative polyprotein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAP52343.1| Score 122 E Value 4e-44 Identity 39.20% Align. Length 612bp (83.49%) Frame 3
putative retroelement [Oryza sativa (japonica cultivar-group)] ref|NP_920056.1| putative retroelement [Oryza sativa (japonica cultivar-group)] gb|AAM74249.1| Putative retroelement [Oryza sativa (japonica cultivar-group)]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0057G21
Clone
Clone name
hba-57g21
LE_HBa0057G21
P057G21
Clone type
BAC
Contamination
none
Estimated length
28,104
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found