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Clone Read LE_HBa0057E13_T7_45145

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0057E13_T7_45145
Primer
T7
ID from Seq. Facility
LE_HBa_057_E13-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
717 trimmed for vector and quality, 901 raw
Sequence
>LE_HBa0057E13_T7_45145 (raw untrimmed)
TGGGTCCCGGGGGGTCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTTNGGGGTTTTAAACTAGCAGACAAATGGAAGTGGAGAAACATTCACAAATCAC
TTGTGGCCACCTAGTCCCTGAATATATCTTATAATTTGTTCAGAACTCTTCATTTTCTTAGCCATTTCATCATATTCCTCATTCTTAAATGTCTTCTCAA
TTTTGAAAGGGGAATTATATTGATGAGTTGGGATACGAGCTTGGAATTTTAAGGGTTTCTTCAGGTGTGTAGGCATGATCATGAAGAAATTTAGATAGAG
AATTATTGTTTTATTTGGGCACCTTGTTGGCTGTGGAATGCTATAAGTTGGCGAATTTGTCACCGTAGAAGTTATAGCGACGCTGGATGTGTCAGCATAG
GGGTCGAATTCAGGTGGATTAATTGGATCATTTTTGACATTTGGATAGGGTGACATATTTGTATTTAGATAGTCAGAGATTGAAGACGGTGGAGCTTGTC
CACTCATTTAAGCTCCGGAAATCTCTTTTATTTGTTGTTTTAGTACCCTTACCTCTTATGTTGACACTATTTCTTGTGAAACCATTTGGTTTCAGACCTC
ATCATTGTACGCCTAATTTCCATATTTGTTGGTCATTTTCTCTTTCCCTTTTTATTTTGTATTGTAGGGATGAGATTCCAGGTTAACCACAAATCAACCA
CCTTTAAGTTAATTATGTGTATTGACAATAAATCTTGTTAGGATTAGAAATTTTTTCAGTTATAACCATATGTTGCACATCTTGAATGCACATGTATTTT
TATTTATCGAATAATCCTTAAAGAAACCAATTTTTTAATCATAACCTAGCCTCCAATAAAATTTAATTTTTTAAAATTTATTTTTAACTTTTAATTTTGG
T
>LE_HBa0057E13_T7_45145 (trimmed for quality and cloning vector)
AGCTTTNGGGGTTTTAAACTAGCAGACAAATGGAAGTGGAGAAACATTCACAAATCACTTGTGGCCACCTAGTCCCTGAATATATCTTATAATTTGTTCA
GAACTCTTCATTTTCTTAGCCATTTCATCATATTCCTCATTCTTAAATGTCTTCTCAATTTTGAAAGGGGAATTATATTGATGAGTTGGGATACGAGCTT
GGAATTTTAAGGGTTTCTTCAGGTGTGTAGGCATGATCATGAAGAAATTTAGATAGAGAATTATTGTTTTATTTGGGCACCTTGTTGGCTGTGGAATGCT
ATAAGTTGGCGAATTTGTCACCGTAGAAGTTATAGCGACGCTGGATGTGTCAGCATAGGGGTCGAATTCAGGTGGATTAATTGGATCATTTTTGACATTT
GGATAGGGTGACATATTTGTATTTAGATAGTCAGAGATTGAAGACGGTGGAGCTTGTCCACTCATTTAAGCTCCGGAAATCTCTTTTATTTGTTGTTTTA
GTACCCTTACCTCTTATGTTGACACTATTTCTTGTGAAACCATTTGGTTTCAGACCTCATCATTGTACGCCTAATTTCCATATTTGTTGGTCATTTTCTC
TTTCCCTTTTTATTTTGTATTGTAGGGATGAGATTCCAGGTTAACCACAAATCAACCACCTTTAAGTTAATTATGTGTATTGACAATAAATCTTGTTAGG
ATTAGAAATTTTTTCAG

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.947578
Expected error %
0.39979
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAU90285.1| Score 174 E Value 3e-42 Identity 19.20% Align. Length 581bp (81.03%) Frame 2
putative gag/pol polyprotein, 3'-partial [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT39964.1| Score 128 E Value 1e-28 Identity 52.00% Align. Length 582bp (81.17%) Frame 1
putative gag polyprotein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0057E13
Clone
Clone name
hba-57e13
LE_HBa0057E13
P057E13
Clone type
BAC
Contamination
none
Estimated length
124,630
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found