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Clone Read LE_HBa0057B01_SP6_44976

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0057B01_SP6_44976
Primer
SP6
ID from Seq. Facility
LE_HBa_057_B01-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
759 trimmed for vector and quality, 790 raw
Sequence
>LE_HBa0057B01_SP6_44976 (raw untrimmed)
TGGTGGTANGATTAAGTTCAGTAAGAATGTGCACAGGTCTAGGAATATGACGGACAAAAGGGATCTTGTCCAGGGGCAGAAGCTAAAGCGTTAAATGAAA
ACATGAGTGGATGGCTTGAATTAAAAAAGAATGTATATGTATAACTGGAATTTGTAATTAAATATATAAACACTAATTACATGCAAGTCTTCTATAATAG
ATGTAGCATGTGCAGGAAATATGTAATTAAGACACTAAGTATTAATTAAATCAAATCCTAAATATTTTAAAAGCCATGCACTACCAATAGGCAATATTAA
ACTAGTATAAATAGCCATCGTTACTAGCACATGAATTCAATCATCAATTAAACTGCGTAATTAATTAGGCCTAACCTTAGCTTATTGACATGGCTTCCAA
AAATCAGGCCTCTATTACCCTTTTCTTATCACTTAATCTCCTCTTCTTTGCTCTTGTAAGTGCAAAGTATTCAACTGATAAAAGTGCAAAGTGTTCAACT
AATATTTTGAAATTTGGGGCATGTACTAATCTAGTTAATGATTTGTTGGGTGTAATTATCGGGACTACTCCAACTTCGTCATGCTGCAGTTTGATTGGGG
GACTGGTGGACCTAGAGGCCGCGGTTTGCTTGTGCACAGCCATAAAAGCAGATATTGTGGGAATTCATTTGGATATACCAATCTATGTAAACATCCTTCT
CAACGTCTGTGGAAAAAAATATCCTACTGGTTACACTTGTTGATTGAAAAATTATTATCTGCTCCATGGACCTCTTGTTCAGAATAAGTA
>LE_HBa0057B01_SP6_44976 (trimmed for quality and cloning vector)
TAAGAATGTGCACAGGTCTAGGAATATGACGGACAAAAGGGATCTTGTCCAGGGGCAGAAGCTAAAGCGTTAAATGAAAACATGAGTGGATGGCTTGAAT
TAAAAAAGAATGTATATGTATAACTGGAATTTGTAATTAAATATATAAACACTAATTACATGCAAGTCTTCTATAATAGATGTAGCATGTGCAGGAAATA
TGTAATTAAGACACTAAGTATTAATTAAATCAAATCCTAAATATTTTAAAAGCCATGCACTACCAATAGGCAATATTAAACTAGTATAAATAGCCATCGT
TACTAGCACATGAATTCAATCATCAATTAAACTGCGTAATTAATTAGGCCTAACCTTAGCTTATTGACATGGCTTCCAAAAATCAGGCCTCTATTACCCT
TTTCTTATCACTTAATCTCCTCTTCTTTGCTCTTGTAAGTGCAAAGTATTCAACTGATAAAAGTGCAAAGTGTTCAACTAATATTTTGAAATTTGGGGCA
TGTACTAATCTAGTTAATGATTTGTTGGGTGTAATTATCGGGACTACTCCAACTTCGTCATGCTGCAGTTTGATTGGGGGACTGGTGGACCTAGAGGCCG
CGGTTTGCTTGTGCACAGCCATAAAAGCAGATATTGTGGGAATTCATTTGGATATACCAATCTATGTAAACATCCTTCTCAACGTCTGTGGAAAAAAATA
TCCTACTGGTTACACTTGTTGATTGAAAAATTATTATCTGCTCCATGGACCTCTTGTTC

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.951801
Expected error %
0.00944956
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At4g12520.1 Score 112 E Value 3e-25 Identity 17.80% Align. Length 257bp (33.86%) Frame 1
68417.m01977 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein similar to 14 kDa polypeptide [Catharanthus roseus] GI:407410; contains Pfam protease inhibitor/seed storage/LTP family domain PF00234
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At4g12510.1 Score 112 E Value 3e-25 Identity 17.80% Align. Length 257bp (33.86%) Frame 1
68417.m01976 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein similar to 14 kDa polypeptide [Catharanthus roseus] GI:407410; contains Pfam protease inhibitor/seed storage/LTP family domain PF00234
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAS80139.1| Score 117 E Value 3e-25 Identity 18.90% Align. Length 269bp (35.44%) Frame 1
arachidonic acid-induced DEA1 [Lycopersicon esculentum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAI51313.1| Score 117 E Value 4e-25 Identity 18.90% Align. Length 269bp (35.44%) Frame 1
arachidonic acid-induced DEA1 [Capsicum chinense]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0057B01
Clone
Clone name
hba-57b1
LE_HBa0057B01
P057B01
Clone type
BAC
Contamination
none
Estimated length
85,433
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found