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Clone Read LE_HBa0056D09_T7_44321

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0056D09_T7_44321
Primer
T7
ID from Seq. Facility
LE_HBa_056_D09-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
684 trimmed for vector and quality, 926 raw
Sequence
>LE_HBa0056D09_T7_44321 (raw untrimmed)
CTGTGAACCGGGGGGACCTCTAGAGTCGACCTGCAGGCATGCAAGCATTTGCAACCAAATATTCTAAAATGGCCTTTTTGAAATATCCTTTCCATACCAA
ACACTATTTGGTACATCTCTTTGCAAAGCAACAGCAGGAGATAGATTAATAACATGTGCAGCGGTCAATAAAGCCTCACCCCAAAATGAGTTTGGCAACT
TTCCTTCAGAAAGCAAACATCTAACTCTTTCCATCAAGTTCGTGTTCATCCTCTCAGCCAAACCATTAGGCTGAGGAGTCTTGGGAGGAGTCTTTTGGTG
TCTAATACCTTGATTCTTGCAGTATTCGTCAAATGGTCCACAAAACTCACCACCATTATCAGTACTAATACATTTCACTTTCTTTCCAGTTTGTCTTTCA
ACTGAAGCCTGAAACTGCTTAAAGACACCTAACACTTGGTCTTTAGTCTTCTATACATAGACCAAAAGTTTTCTCGATCAATCATCAATGAAAGTGACAA
AGTAAAGTGCACCACCTAATGTCTTTGTCTTCATTGGACCACATAAATCAGAGTGCACTAACTCAAGCAACTCTGTCTTTATCGAAGGAGGGTAGGAATT
AAAGGAAACTCTATTTTGTTTACCAGCCAAGCGGTGCTCACATTTTTCTAATTTTACACTCTGGAAATTTGACAATAATTTCTTTCTTTGGCTAGAAAAT
TTAAGCCCTTTTCTCACTTAATGTGGCTAACCCTCCTTGTGCCATAATGTTTGAAGAGCCATCCGCTCTCTAACCACATTCACCCTCTTCACCACCAAGT
TAAGAGGGTGGAATTCTTTGTTTTAGATCCACCACTTTCTGGTTTACCCCCAATCCCCAATCCCAAAGGGAACCCCTTTAATGAAACTCTTGAAATTTTT
TCCCTTCCCCGGGCTGGGGGACCAAA
>LE_HBa0056D09_T7_44321 (trimmed for quality and cloning vector)
AGCATTTGCAACCAAATATTCTAAAATGGCCTTTTTGAAATATCCTTTCCATACCAAACACTATTTGGTACATCTCTTTGCAAAGCAACAGCAGGAGATA
GATTAATAACATGTGCAGCGGTCAATAAAGCCTCACCCCAAAATGAGTTTGGCAACTTTCCTTCAGAAAGCAAACATCTAACTCTTTCCATCAAGTTCGT
GTTCATCCTCTCAGCCAAACCATTAGGCTGAGGAGTCTTGGGAGGAGTCTTTTGGTGTCTAATACCTTGATTCTTGCAGTATTCGTCAAATGGTCCACAA
AACTCACCACCATTATCAGTACTAATACATTTCACTTTCTTTCCAGTTTGTCTTTCAACTGAAGCCTGAAACTGCTTAAAGACACCTAACACTTGGTCTT
TAGTCTTCTATACATAGACCAAAAGTTTTCTCGATCAATCATCAATGAAAGTGACAAAGTAAAGTGCACCACCTAATGTCTTTGTCTTCATTGGACCACA
TAAATCAGAGTGCACTAACTCAAGCAACTCTGTCTTTATCGAAGGAGGGTAGGAATTAAAGGAAACTCTATTTTGTTTACCAGCCAAGCGGTGCTCACAT
TTTTCTAATTTTACACTCTGGAAATTTGACAATAATTTCTTTCTTTGGCTAGAAAATTTAAGCCCTTTTCTCACTTAATGTGGC

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.949312
Expected error %
1.24096
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAV88069.1| Score 298 E Value 3e-79 Identity 66.80% Align. Length 663bp (96.93%) Frame 3
hypothetical retrotransposon [Ipomoea batatas]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
pir||T02206 Score 268 E Value 9e-71 Identity 21.70% Align. Length 608bp (88.89%) Frame 1
hypothetical protein - common tobacco retrotransposon Tto1 dbj|BAA11674.1| ORF(AA 1-1338) [Nicotiana tabacum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0056D09
Clone
Clone name
hba-56d9
LE_HBa0056D09
P056D09
Clone type
BAC
Contamination
none
Estimated length
119,304
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found