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Clone Read LE_HBa0053L16_SP6_43950

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0053L16_SP6_43950
Primer
SP6
ID from Seq. Facility
LE_HBa_053_L16-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
738 trimmed for vector and quality, 947 raw
Sequence
>LE_HBa0053L16_SP6_43950 (raw untrimmed)
TATCCCTGGGCAGGGGTAAATCGTACAACACAAGCGACTCGATCAATTAATCAGACAACTCTGCCCCTTTCCTGAACTAAGTTCGGGTATCATAAAGCCG
CAGGTACCTTGATGATTACGATATTAAGGCAAGTAAAAGTTTAGCACAGAGTAATCATAATTCATACCTCTGTCCATTTTGCTAGTTTTGGCCTCCCAGA
TGTGATATCATAATTTAACCCCTCTTTCAAGAAGATTTGGAACCTTTCAACGAAGGGAGCATACACGATATCGACCTGATGCACCAAATTTCAACATCAA
TATGATGAAAGCTAAAGATACCATCTTACACTTCACACATCGTACTAATATTACTGACCTGACTGAATTGACCTAGGAAGAAAGGTCCGTCATCAAATTT
GTCGAGAGCTTTTTCTAAGTAGTCAAATTGAGGTCCTGGTGCAAGTGTGAACTATTGTTAACGTCTCGTGAGAAAATTACAAAATGAAGTTGAAAACACG
AATATTCAAGCATCTCACCAGCATGCTTTTCAATATCTCCTTTGAAGTTGGCATATATTTCTTTCAGGAACGTATCACTGTAAGCTATCAACTCTTCAGC
AAACTTCTGTTTTTCAGGGTCCTAAACCATTTAACAAAATCACATCAAATTTAAAACTTTTGCTTCCTTTTCTTTTGTCTACGTTTTAGTGCCATGTCGG
GAAGAAGCGGAGGGTTTTGAAAATAAGAAGTCCTGTTTAGGCAAAGAATGAGTTTTGGAGCTTACATCAGGTAGAAGAAACGGACCCTCAAAGTTGCTGT
CGATATATTTAACCAGATCGAAACTTTCTCCAATCCCTTTGTTGTTGTGTTCAGAAAGGGCACCTATGGAAAAATAGAACAAACACTTACCCAATCGAAG
CAATAATTTGATTTCAAATATCAGGTTGACAGAAACTCCAATTGAAA
>LE_HBa0053L16_SP6_43950 (trimmed for quality and cloning vector)
GTACAACACAAGCGACTCGATCAATTAATCAGACAACTCTGCCCCTTTCCTGAACTAAGTTCGGGTATCATAAAGCCGCAGGTACCTTGATGATTACGAT
ATTAAGGCAAGTAAAAGTTTAGCACAGAGTAATCATAATTCATACCTCTGTCCATTTTGCTAGTTTTGGCCTCCCAGATGTGATATCATAATTTAACCCC
TCTTTCAAGAAGATTTGGAACCTTTCAACGAAGGGAGCATACACGATATCGACCTGATGCACCAAATTTCAACATCAATATGATGAAAGCTAAAGATACC
ATCTTACACTTCACACATCGTACTAATATTACTGACCTGACTGAATTGACCTAGGAAGAAAGGTCCGTCATCAAATTTGTCGAGAGCTTTTTCTAAGTAG
TCAAATTGAGGTCCTGGTGCAAGTGTGAACTATTGTTAACGTCTCGTGAGAAAATTACAAAATGAAGTTGAAAACACGAATATTCAAGCATCTCACCAGC
ATGCTTTTCAATATCTCCTTTGAAGTTGGCATATATTTCTTTCAGGAACGTATCACTGTAAGCTATCAACTCTTCAGCAAACTTCTGTTTTTCAGGGTCC
TAAACCATTTAACAAAATCACATCAAATTTAAAACTTTTGCTTCCTTTTCTTTTGTCTACGTTTTAGTGCCATGTCGGGAAGAAGCGGAGGGTTTTGAAA
ATAAGAAGTCCTGTTTAGGCAAAGAATGAGTTTTGGAG

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.967771
Expected error %
0.279238
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At3g55040.1 Score 52 E Value 2e-14 Identity 58.30% Align. Length 280bp (37.94%) Frame 3
68416.m06112 In2-1 protein, putative similar to In2-1 protein, Zea mays, P49248
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At5g02780.1 Score 51 E Value 1e-17 Identity 40.00% Align. Length 453bp (61.38%) Frame 3
68418.m00220 In2-1 protein, putative similar to In2-1 [Zea mays] EMBL:X58573
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
dbj|BAC81649.1| Score 54 E Value 6e-22 Identity 50.00% Align. Length 453bp (61.38%) Frame 3
glutathione S-transferase [Pisum sativum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAG34872.1| Score 52 E Value 9e-20 Identity 42.50% Align. Length 453bp (61.38%) Frame 3
In2-1 protein [Glycine max]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0053L16
Clone
Clone name
hba-53l16
LE_HBa0053L16
P053L16
Clone type
BAC
Contamination
none
Estimated length
121,907
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found