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Clone Read LE_HBa0053L01_SP6_43920

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0053L01_SP6_43920
Primer
SP6
ID from Seq. Facility
LE_HBa_053_L01-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
459 trimmed for vector and quality, 852 raw
Sequence
>LE_HBa0053L01_SP6_43920 (raw untrimmed)
AGTCCGGCTGCAGCTTACTACTACCACGGTATAATCATTGACAAGGGAACAGAACCATCCTGCCACGTTAGTGCAGTATGCTGTTTCCTCGCAGCAGAAG
AACTACTTGCTGAGAGCAAAAAAGCCTCCTTAAGTTTCTGCCTTGCAGAACCTATCACCAGGTTTTTAACTATTTATTTAATCACATTGCAATGAATGAC
CATCACAGAAGTAGTAAATTTCCTTCATGTTTTTTCGTAGAACTCCTCCAGCATGGGGTGTTATGAAACATTTAAACAAAAAAGTGCCGGAAACTGCTGC
CAAGAAGTCCCAAATGTATGGCTACCTTTTGGACCAAGAAAAGTGAGTCTTATGAAACTTTCTTGTAATTATGCTTCTTCAGATTTTCACACATATATTT
AAATAATATGATGAGTTTGCAATTAGCAGAGATCTTCGAGTACTACCCGATTTTCCAGAATTCCAGTTGTCACTCAAACCTGACGACTACACATTGCCAG
AAGCAGATTCAACATGGGATAGTGAAAAATGGGATATAAGCCTTCAAAGAACATCTAAAGATTGTGAAGAAACTGACTAGCATTATTTGACCCGAAATAT
CTTCTGTGTCACCTATTTAATCGAATAATACTTGTCGTTGAGCTGGAGGTGCAAGGCTTCATTCATCTCTAATATACGGCCTACATATACCCCTTAGCTG
GAAAATGAAATCTCCGTTAGTATTATGCACTCACTGCATTTAATTCTATTTCCTTTCCGAAATTGGCGCTTTCTCTTTTATCCTTTTATTTTAGCGATAC
TCCTCCCTAAACAATTGTTATTTTCCGTGCTCCTATCCTTTGTTTAATTGGC
>LE_HBa0053L01_SP6_43920 (trimmed for quality and cloning vector)
TACTACCACGGTATAATCATTGACAAGGGAACAGAACCATCCTGCCACGTTAGTGCAGTATGCTGTTTCCTCGCAGCAGAAGAACTACTTGCTGAGAGCA
AAAAAGCCTCCTTAAGTTTCTGCCTTGCAGAACCTATCACCAGGTTTTTAACTATTTATTTAATCACATTGCAATGAATGACCATCACAGAAGTAGTAAA
TTTCCTTCATGTTTTTTCGTAGAACTCCTCCAGCATGGGGTGTTATGAAACATTTAAACAAAAAAGTGCCGGAAACTGCTGCCAAGAAGTCCCAAATGTA
TGGCTACCTTTTGGACCAAGAAAAGTGAGTCTTATGAAACTTTCTTGTAATTATGCTTCTTCAGATTTTCACACATATATTTAAATAATATGATGAGTTT
GCAATTAGCAGAGATCTTCGAGTACTACCCGATTTTCCAGAATTCCAGTTGTCACTCAA

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.959358
Expected error %
0.350111
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At5g14020.1 Score 62 E Value 1e-22 Identity 39.20% Align. Length 456bp (99.35%) Frame 2
68418.m01639 expressed protein
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|NP_196906.2| Score 62 E Value 5e-21 Identity 39.20% Align. Length 456bp (99.35%) Frame 2
expressed protein [Arabidopsis thaliana]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0053L01
Clone
Clone name
hba-53l1
LE_HBa0053L01
C02HBa0053L01
P053L01
Clone type
BAC
Contamination
none
Estimated length
117,961
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found