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Clone Read LE_HBa0053C17_SP6_43520

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0053C17_SP6_43520
Primer
SP6
ID from Seq. Facility
LE_HBa_053_C17-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
539 trimmed for vector and quality, 902 raw
Sequence
>LE_HBa0053C17_SP6_43520 (raw untrimmed)
CGAAGTTCTTAAGCGCGTGGGGGGAGGTGGCCTATGAATTGGCCTTTCCTCCAGAGCTGTCAGGAGTGAACCCGGTATTTCATGTGTCAATGCTTAAGAA
ATACCACGGTGATGAAAATTACATTATTCGTTGGAATTCAGTTCTTCTTGATGAGAATCTGTCTTATGAGGAGGAGCCTGTTTCTATTCTAGATAGGGAG
GTCCGCAAGTTGAGATCAAAGGAGATTGCATCTATCAAGGTTCAGTGGAAGAATCAGTCAGTCGAAGAGTCCACTTGGGAGAGTAAGGCTGATATGCGTA
AAAGATATCCACACATTTTTATCAATTCAGGTACCTTTCCTTACTCTCACTTTCTGTTGATCGTTCGAGGACGAACGATGGGTAATTTGGTATCTATTGT
AACGACCCTTTGGGTCGTTTCGTGTGTTAAAACCTTATGTTTCATAAAATACTTTTTGATATATTCTAAGTGGATATTTTGGACTATTAGTAATTATAAT
TATAAAATTAGTGGGGTAGTTTTTAATAATAAATATACTTCGTGGTTTAATAAGATAGCCATAAAAATTAATAGTAGCTTGTTTTTACCCTTTTTACGAT
TAGTCATTACGGTTAATATTTTCCTGATGATACCATAAATAGTTCTATGACCCTTGTTTCCTTTTGTTGCCCGTGCCCTGGATAAAGATCGCCCGCAAAG
AGGTTAGAACTTCCCCCTAGTCTCTTACTATTTTTCTATCCATGATTAAATTTGTCATGGCTCTCACCCCTCTCTTATCTCACTTCATTTGTCTGTGACC
TCATATTTTGTTACTCTACTCATTTATACATAATAATAAATCTGACATGAGTGGATATGAGTTCATGGGCTTAGATGGTCTGATTCCCTTTCTGTTTTTT
TT
>LE_HBa0053C17_SP6_43520 (trimmed for quality and cloning vector)
CGAAGTTCTTAAGCGCGTGGGGGGAGGTGGCCTATGAATTGGCCTTTCCTCCAGAGCTGTCAGGAGTGAACCCGGTATTTCATGTGTCAATGCTTAAGAA
ATACCACGGTGATGAAAATTACATTATTCGTTGGAATTCAGTTCTTCTTGATGAGAATCTGTCTTATGAGGAGGAGCCTGTTTCTATTCTAGATAGGGAG
GTCCGCAAGTTGAGATCAAAGGAGATTGCATCTATCAAGGTTCAGTGGAAGAATCAGTCAGTCGAAGAGTCCACTTGGGAGAGTAAGGCTGATATGCGTA
AAAGATATCCACACATTTTTATCAATTCAGGTACCTTTCCTTACTCTCACTTTCTGTTGATCGTTCGAGGACGAACGATGGGTAATTTGGTATCTATTGT
AACGACCCTTTGGGTCGTTTCGTGTGTTAAAACCTTATGTTTCATAAAATACTTTTTGATATATTCTAAGTGGATATTTTGGACTATTAGTAATTATAAT
TATAAAATTAGTGGGGTAGTTTTTAATAATAAATATACT

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.962276
Expected error %
0.125196
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38724.1| Score 137 E Value 2e-31 Identity 20.20% Align. Length 311bp (57.70%) Frame 1
putative retrotransposon protein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38792.1| Score 132 E Value 6e-30 Identity 18.90% Align. Length 311bp (57.70%) Frame 1
putative gag-pol polyprotein [Solanum demissum] gb|AAT38791.1| putative gag-pol polyprotein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0053C17
Clone
Clone name
hba-53c17
LE_HBa0053C17
P053C17
Clone type
BAC
Contamination
none
Estimated length
108,632
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found